Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l06
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   3.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.2  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 502 IDYXQEARCYICFVQNCL 555
           ID  Q  RC  C  Q CL
Sbjct: 130 IDKRQRNRCQYCRYQKCL 147


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 375 GYLNLKKTTLKHPFGKIGLITCVQLETKKQ 464
           G+LN+   TL   FG   +   + L+ +KQ
Sbjct: 365 GFLNIDYGTLYSLFGSTAMNVIILLQFQKQ 394


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 233 DNIQLKEQLLNGIKA 277
           DNI L E++ NG +A
Sbjct: 198 DNIDLYEEIFNGNRA 212


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 233 DNIQLKEQLLNGIKA 277
           DNI L E++ NG +A
Sbjct: 205 DNIDLYEEIFNGNRA 219


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 302 EVCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDXETATAL 475
           E+ + + ++ +  L     +E + RLS  ++DD    V  D  D   S+      T L
Sbjct: 7   EIKSKISFSVESLLSKKEDEEVEHRLSDRDDDDENITVDDDDTDGRESLSPSSAHTVL 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,482
Number of Sequences: 336
Number of extensions: 2385
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)