Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l06
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 51 1e-07
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.31
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 2.2
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.0
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 26 5.0
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 6.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 6.6
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 25 6.6
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.7
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 25 8.7
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.7
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 8.7
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 51.2 bits (117), Expect = 1e-07
Identities = 39/168 (23%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Frame = +2
Query: 155 LSAEGKTPEYMALAGIKFKLSLPEFKDNIQLK-EQLLNGIKAGHMAPYYKEVCND----L 319
++ + +T + ++ F+LS P ++ Q + L + I+ +AP YK + +
Sbjct: 13 MTEKARTVSDLTISQAIFELSSPFLENKSQKALDTLFSAIRDHDLAPLYKYLSENPKTSA 72
Query: 320 GWTFDQKLYDDMTKENQDRLSKFE---EDDSE-------TPVWQDRLDYLCSVGDXETAT 469
FD + M K+N+++L++F+ ED E +++ DY ++ D E
Sbjct: 73 SIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGV 132
Query: 470 ALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHEL 613
L +E +TL T ++D +F+ R+AY + +++ +G+ + K L
Sbjct: 133 QLCDETFERATL-TGMKIDVLFSKIRLAYVY-ADMRVVGQLLEKLKPL 178
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.9 bits (64), Expect = 0.31
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = +2
Query: 137 NQLKMELSAEGKTPEYMALAG-IKFKLSLPEFKDNIQL---KEQLLNGIKAGHMAPYYKE 304
N LK + E E + G ++ K L +N++ K + L +A A KE
Sbjct: 115 NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKE 174
Query: 305 VCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDXETA 466
C + W QKLY DM +EN + K E Q LD+ E+A
Sbjct: 175 EC-EKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQ--LDHDLQASQNESA 225
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 162 RREKHLNTWHWPESNSNSVYL 224
R E +TW WP N NSV L
Sbjct: 275 RDEIGSSTWSWPSQNCNSVLL 295
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYKEVCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDS 403
Y K++ N L DQ+ D ++E SKFE DDS
Sbjct: 991 YVKDMKNPLA---DQRASLDESRETTTASSKFESDDS 1024
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 155 LSAEGKTPEYMAL-AGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAP 292
+S +GK E +AL G+ LSL EF+ + L E L + I A + P
Sbjct: 229 VSIDGKEFERVALNEGVSVTLSLREFRAAVILAEALGSSICAYYGVP 275
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 398 DSETPVWQDRLDYLCSVGDXETATALA 478
D P++Q LDY + GD A AL+
Sbjct: 542 DEAKPIYQKWLDYESNYGDLNAAIALS 568
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 347 DDMTKENQDRLSKFEEDDSETPVWQDRLDY-LCSVGDXETAT 469
D+ +NQ ++E++D+ + ++D LDY VG+ ++ T
Sbjct: 1932 DEEDLDNQGEEFEWEDEDNASSGYEDELDYNEDEVGENDSTT 1973
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 347 DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVG 451
D N +S EEDDS+ V D+L+ SVG
Sbjct: 95 DHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVG 129
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 302 LYNKEPCVQPLFHSITAP 249
LY + PC+ PL+H+ P
Sbjct: 11 LYRENPCLLPLYHATRDP 28
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -3
Query: 601 LIDSFSHFLHITSMEISNSEQSKYSIEPPV 512
+ID F+ F+ E ++ KY PP+
Sbjct: 168 VIDEFADFIEQDEFEDEERQEEKYETGPPI 197
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +3
Query: 405 KHPFGKIGLITCVQ--LETKKQL 467
+HP+G +G + CV+ E +KQL
Sbjct: 164 EHPYGGLGFVGCVEEIYEQEKQL 186
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 290 PYYKEVCNDLGWTFDQKLYDDMTKENQDRLSKFE 391
P E D+ W+F ++ K+ Q LSKF+
Sbjct: 137 PMTAETLGDISWSFSRRENMKFEKDQQYILSKFK 170
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 285 WLLIIKRCAMTLAGLLTRSCMMT*QKKIKTGYLNLK 392
WL IK+ A+ L G + C K + T Y++L+
Sbjct: 502 WLDHIKKVAICLYGYVLDPCRAMDPKVVSTSYVSLQ 537
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 323 WTFDQKLYDDMTKENQDRLSKFEEDD 400
W D +LY+ +E ++ LSK +DD
Sbjct: 290 WKVDFRLYEVFCEETKNDLSKLLKDD 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,014
Number of Sequences: 5004
Number of extensions: 41958
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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