Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l06
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    30   1.3  
01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285           29   2.2  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    29   2.9  
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    29   3.9  

>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 194 PMPCIQVFFPPLIAPFSIDCNASIYQRY*SLFRS 93
           P PC  V   P + PFS+ C  + Y    S F S
Sbjct: 471 PFPCCHVIVYPFLVPFSLQCEVTNYFSVSSRFGS 504


>01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285
          Length = 321

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 347 HTTSGQKSSQGHCTPLYNKEPCVQPLFHS 261
           H   G KS     TP+YN  P   P  HS
Sbjct: 31  HDDDGDKSPSTQATPVYNNSPLDSPSHHS 59


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +2

Query: 323 WTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDXETATALATSKYEDST 502
           W  D++  DD+ +E  +R+ + E +++E  V Q+++  L +VG+       A+ +   S+
Sbjct: 388 WDGDEE--DDVLEEVYERVEREEMEENEAGVQQEKIVQLANVGEVVVTPKRASERLMGSS 445


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 332 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDXETATALATSKYED 496
           + K Y+++ +E ++   +FE+DD E     D  D   S  D E    +  S+ E+
Sbjct: 162 NNKQYENLIQECREHPERFEDDDVEDKDDDDETDDDASDADIEDPEKMVMSESEE 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,492
Number of Sequences: 37544
Number of extensions: 239048
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)