Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l05
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    28   0.75 
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   1.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   3.0  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    25   5.3  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   7.0  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   9.2  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    25   9.2  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 443  PVL*GDVPVQIPSYVKRNLVVRNSNNCVSHGRIDKEAAFLYSDKLDSPVNS 291
            P+L G  PV +PS     +    S N  S+GR D     L +   D P N+
Sbjct: 1048 PLLNGKSPVGVPSEAALRVSTDVSTNISSNGRADIPVDTLITSPADVPNNA 1098


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 251 SARIPNKYRDYCAHYLLDYQVCRYKE 328
           SA++ N Y +YC H  L   + RYKE
Sbjct: 74  SAQVINLYMEYCGHGDLANLIQRYKE 99


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 230  AKEEDLISARIPNKYRDYCAHYLLDYQVC-RYKEMPLLYRCAHEKHNYLNCEQQDY 394
            A+ + L   R P +  + CA Y +  +VC +Y +   ++   H   +Y+   Q+ +
Sbjct: 1304 AEFQGLWPLRTPEEKEEVCAVYNISQRVCTKYVQFGNVFNLLHAAVSYIRIHQKGF 1359


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 502 LTPLTTLVFNDLGSSTNPIFPYSKATFPFKFLH 404
           L PL+ +  + L + T P+ P+S +  P  F H
Sbjct: 833 LEPLSCIPSSSLTNFTQPLVPFSVSRDPISFYH 865


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 428 DVPVQIPSYVKRNLVVRNSNNCVSHGRIDKE 336
           DVPV  P Y+K  +   N++     G IDKE
Sbjct: 456 DVPVSSPDYLKDLVNALNTSKEQHKGAIDKE 486


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 111 VVMYRIKLSPDKILFCYI 58
           V+  RIKLSP+K +F +I
Sbjct: 63  VIRKRIKLSPEKAIFIFI 80


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 508 TYL-TPLTTLVFNDLGSSTNPIFPYSKATFPFKFLH 404
           +YL TPLT ++ N L  +    +     TF FK LH
Sbjct: 104 SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLH 139


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 24  IFVLKHSVHYNKYNKIVFYLVTT 92
           +F +KH +  NK+++  FYL  T
Sbjct: 343 VFRIKHHIPLNKWDRSSFYLPKT 365


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 164 DDNPTFDPQAGFQYERKQREMIAKEEDLISA-RIPNKYRDYCAHYLLDYQVC 316
           DD  T   +   +  +KQ ++I K     S  R   +  DY  HYL+D  +C
Sbjct: 14  DDEST---ERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNGIC 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,182
Number of Sequences: 5004
Number of extensions: 35997
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)