Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l05
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0212 - 1668776-1669105                                           52   2e-07
05_04_0436 + 21226656-21226695,21226819-21226934,21227059-212272...    29   3.1  
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    27   9.3  
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458...    27   9.3  

>03_01_0212 - 1668776-1669105
          Length = 109

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +2

Query: 218 REMIAKEEDLISARIPNKYRDYCAHYLLDYQVCRYKEMPLLYRCAHEKHNYLNCEQQDYV 397
           +  IA + ++  AR+P  YRD CAH L+    CR  E  L ++C  E+H Y  C+ +  +
Sbjct: 15  KPQIATQAEMSEARLPLPYRDQCAHLLIPLNKCRVAEYYLPWKCEPERHAYEKCQYELVM 74

Query: 398 LRM 406
            RM
Sbjct: 75  ERM 77


>05_04_0436 +
           21226656-21226695,21226819-21226934,21227059-21227210,
           21227309-21227394,21227999-21228126,21228267-21228317,
           21228574-21228660,21229418-21229487,21230334-21230470,
           21230855-21230932,21231912-21231998
          Length = 343

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 517 ILFTYLTPLTTLVFNDLGSSTNPIFPYSKATFPFKFLHT*NVIL--LFAIQIIVFLMGAS 344
           I + + TP+   V     +    +FP   A  PF  L   ++++  +F    + F +   
Sbjct: 199 IFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDIVIPGIFVALALRFDVSRG 258

Query: 343 IKKRHF 326
           IK R+F
Sbjct: 259 IKNRYF 264


>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 182 DPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLDYQVCRYKEM 331
           DP A F    +  +  AK +D  S  +P+KY    A +++DY+ C  + +
Sbjct: 26  DPDAAFIVCVRFGQYTAKLDDGSSVHVPSKY----AEWVVDYRQCTLESL 71


>01_06_0840 +
           32343700-32344138,32345329-32345419,32345584-32345866,
           32346023-32346097,32346470-32346514,32346889-32346979,
           32347060-32347118,32347621-32347704,32348109-32348168,
           32348585-32348637,32348724-32348757,32349334-32350335,
           32350477-32351035,32351873-32352372,32352793-32353200
          Length = 1260

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 272 YRDYCAHYLLDYQVCRYKEMPLLYRCAHEKHNYLNCEQQDYV 397
           Y  + A  LL+YQ+   K MP+   C   K    NC   D++
Sbjct: 745 YSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFL 786


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,171,240
Number of Sequences: 37544
Number of extensions: 197342
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)