Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l04
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    28   1.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   1.3  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   3.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   4.0  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.3  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.1  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +2

Query: 419 QSKSFTGLYTADTNVIGAVRYGYNLKNDDN----GVQHFEVQPETFTCESIGEPKITLSS 586
           +  S     +A  N + A    +N++N +N    G  H E   E +  + + EP+I  SS
Sbjct: 47  RQNSIAASMSAYPNGMYAGAENHNVENHENYTMVGHDHME---EVYGDDLVNEPRIAYSS 103

Query: 587 DLSSALE-KDSGNN 625
           D+ +  + KD G+N
Sbjct: 104 DIVATFDGKDFGSN 117


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 435 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 340
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 392 GDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKND 502
           G IVI L +  +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 428  SFTGLYTADTNVIGAVRYGYNLKNDDNGV---QHFEVQPETFTCESIGEPKITLSSDLSS 598
            + T +Y+ D+ ++ +V+    L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 599  ALEKDS 616
            +L KD+
Sbjct: 896  SLSKDA 901


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 530 QPETFTCESIGEPKITLSSDLSSALEK 610
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +2

Query: 413 TEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDL 592
           T  + S++  Y+  T + G+  YG  + + D+  + F   PE+  C+    P   L S +
Sbjct: 48  TRHNPSWSHPYSV-TWLNGSSYYGLAISHIDDSQRVFGPDPESVPCQYYFNP-AGLYSII 105

Query: 593 SSALEKDSGN 622
            SA E  SGN
Sbjct: 106 ISAREFASGN 115


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 441 SPVKDFDCSVNSITMSPTICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKFLKRITI 268
           S  KD+  S +  T+S  I KSA V  S   ALV+  +    +F+    F  ++RI+I
Sbjct: 197 SSQKDYTQSTHEQTLSSPISKSASVSKSENKALVNNKRYSDSYFY----FSKMRRISI 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,754
Number of Sequences: 5004
Number of extensions: 59132
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)