Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l02
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 52 5e-08
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.2
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 26 3.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 3.8
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 5.1
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 5.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 6.7
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 8.9
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 52.0 bits (119), Expect = 5e-08
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +3
Query: 27 DPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEKTDGP 206
DP I + + + + N + V I + + EKS + GR + +L K++
Sbjct: 37 DPKINLTPEKLVIDSKSGA-NAHYAVQIDFFKDIDVEKSKYSVTGRYIFFVLYKKELQEE 95
Query: 207 FWPTLTKDKKKPHYLKIDFNKW 272
FWP LTK+K + H+L+ DF++W
Sbjct: 96 FWPRLTKEKLRLHWLRTDFDRW 117
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 199 SVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTES 50
S+F F I L L TK++FS + ++ ++ C SG + YTES
Sbjct: 140 SIF-FHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIYMSVGYTES 188
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 181 NIISTHLPLFTKTLFSGRTVSYSA----IVTSCSLLSGAPSPLK 62
N++ T L + K LF +T S S +++SC+L+SGA L+
Sbjct: 274 NVLITALLISKKVLFLTKTSSASVLADFVLSSCALVSGATGLLQ 317
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 15 VETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEK 194
V+ +D ++ +EK+++ + + V LY+ ++PEKS F VE+ L K K
Sbjct: 204 VKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVPEKSSFKLFSSKVEITLIK-K 262
Query: 195 TDGPFWPTLTK 227
W L K
Sbjct: 263 VSEIKWEALVK 273
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 199 MVHSGRR*QKTRKSRIT*KLISTNGMMRMMKLKKIIHMISSKCSRTLV 342
++HS R +K T LI NG+ + L KI + + S R LV
Sbjct: 328 LLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILV 375
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 187 FRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLL 86
FR+ ++ PLF + +F+ SY+ + ++L
Sbjct: 469 FRSAMAASFPLFARAMFNNTGPSYAPVAWGSTIL 502
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 211 QNGPSVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIV 32
Q + S R +IS +LF G + + T C+++SGA + + T + S+LI+
Sbjct: 357 QTNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQVA-TIACSVLIL 415
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 6.7
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = -2
Query: 241 GFFLSFVSVGQNGPSVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLL---SGAPS 71
G L+ + Q G FSF N + L TL + +T CSLL S P
Sbjct: 196 GSILALLCKTQKGDPYFSFLNAVLMKCVLTQHTLDVLLLTKKDSSMTLCSLLNAISFEPI 255
Query: 70 PLKYTESFSILIVGSL 23
LK F I+ S+
Sbjct: 256 NLKAIPLFFIICADSI 271
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 289 KLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMT--WKLTLMMRIYLIWNKMTLKKYSNV 462
+L IIH R L+ + LGR Q+ L ++ W L +R I+ +L +
Sbjct: 246 RLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMA 305
Query: 463 TFKVFL 480
F+ ++
Sbjct: 306 IFQTYV 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,965
Number of Sequences: 5004
Number of extensions: 38138
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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