Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l02
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    48   6e-06
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529...    45   4e-05
08_02_0588 + 19036509-19039235                                         25   0.71 
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782...    27   8.9  

>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +3

Query: 3   LTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMI 179
           LT S+ + KD  +K E   + F      +      T+ L+D+VLPE S    K     +I
Sbjct: 20  LTISLPDAKDVVLKTEPQGL-FSFLAVANGEPFSFTLELFDSVLPEGSKTKTKMGLRNII 78

Query: 180 LRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 272
              +K    +W  L K ++K  Y+K+D+NKW
Sbjct: 79  CSIQKEKKGWWKRLLKSEEKHPYIKVDWNKW 109


>03_03_0158 -
           14951504-14951568,14952722-14952797,14952876-14952943,
           14952997-14953156,14953239-14953425,14953982-14953986
          Length = 186

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +3

Query: 18  ETKDPTIKIEKDSVY-FRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEK 194
           + +D  + ++ +  + F  +G  D+  +E+ + L+D V  E+S      R +  +++K  
Sbjct: 24  DARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVEESKAAVAARSICYLIKK-- 81

Query: 195 TDGPFWPTLTKDKKKPH-YLKIDFNKW 272
            +  +WP L K + KP  +LK+D++KW
Sbjct: 82  AESKWWPRLLKKEGKPPVFLKVDWDKW 108


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 0.71
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 320 ANAPELWWSWWSW 358
           AN   ++W+WW W
Sbjct: 10  ANLVRVFWAWWWW 22



 Score = 24.6 bits (51), Expect(2) = 0.71
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +2

Query: 338 WWSWWSWAE 364
           WW WW W +
Sbjct: 20  WWWWWWWGD 28


>01_06_0311 -
           28377414-28377623,28377758-28377856,28378116-28378253,
           28378697-28378827,28378920-28379066,28379164-28379293,
           28379625-28379654,28380138-28380416
          Length = 387

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 21  TKDPTIKIEKDSVYFRGEGAPDNRL 95
           TKD T+K+ +D  +   EG PD+R+
Sbjct: 348 TKDKTLKLYEDGYHSILEGEPDDRI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,142
Number of Sequences: 37544
Number of extensions: 241605
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)