Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l02
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 32 0.28
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 31 0.65
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 0.65
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 0.65
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 0.65
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 30 1.1
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 30 1.1
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 29 2.0
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 29 2.0
U64600-1|AAK39203.1| 500|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 27 6.0
U53337-3|AAA96185.2| 194|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z77652-11|CAI70405.1| 310|Caenorhabditis elegans Hypothetical p... 27 8.0
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 27 8.0
AC024757-10|AAF59455.1| 384|Caenorhabditis elegans Hypothetical... 27 8.0
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 27 8.0
>U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical
protein ZC395.10 protein.
Length = 175
Score = 52.0 bits (119), Expect = 2e-07
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Frame = +3
Query: 3 LTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMI 179
LT V E K +K E + ++F+G D +E T+ +D + P V I
Sbjct: 18 LTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPASVKHTGSSTRVVEI 75
Query: 180 LRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWXXXXXXXXXXXS-----------YDFEQM 326
++KT +WP L ++K K H+LK+DF KW + +D Q
Sbjct: 76 TVQKKTPA-WWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAEDAGAGIGGGMANGFDLNQY 134
Query: 327 LQNFGGAGG 353
+ GGAGG
Sbjct: 135 MSQMGGAGG 143
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 411 HHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNH--MNYFLQLHHPHHSIC*NQFS 250
HHQ SH + S + +Q Q +G++ RN+ N Q ++P++ + N S
Sbjct: 390 HHQHHQQSHDQNSTISSVEYNQYQQKAGSYGRNYHPYNNHHQQYNPYNQVLENSSS 445
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -3
Query: 402 SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 223
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 145 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 203
Query: 222 LASARMDHLFF 190
L S R H ++
Sbjct: 204 LISPRSSHSYY 214
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -3
Query: 402 SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 223
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 1785 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1843
Query: 222 LASARMDHLFF 190
L S R H ++
Sbjct: 1844 LISPRSSHSYY 1854
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -3
Query: 402 SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 223
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 1886 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1944
Query: 222 LASARMDHLFF 190
L S R H ++
Sbjct: 1945 LISPRSSHSYY 1955
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -3
Query: 402 SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 223
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 1886 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1944
Query: 222 LASARMDHLFF 190
L S R H ++
Sbjct: 1945 LISPRSSHSYY 1955
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 423 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 307
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 423 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 307
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 423 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 307
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 423 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 307
Q HQ Q HQ +P+ Q+H A+ +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 265 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 441
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 35 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 91
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 265 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 441
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 51 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 107
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 265 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 441
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 44 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 100
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 265 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 441
TNGM R+ ++ + S + +R EL + GR KNL W+LT + ++L N +T
Sbjct: 44 TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 100
>U64600-1|AAK39203.1| 500|Caenorhabditis elegans Hypothetical
protein C33D12.2 protein.
Length = 500
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 54 SVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFV 152
+V+F G+ + N HE+TI V+P K+V V
Sbjct: 16 TVFFSGKSSEKNVCHEITIKHNVVVVPNKNVRV 48
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
F29G6.3b protein.
Length = 1785
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 438 HFIPDQVNSHHQSQFPSHQTKVFLPSAQDHQLHQS 334
++IP HQS+ +Q+ +LP +Q HQS
Sbjct: 1216 NYIPALPPKEHQSRHEHYQSHSYLPPSQKSTSHQS 1250
>U53337-3|AAA96185.2| 194|Caenorhabditis elegans Hypothetical
protein R02E12.6 protein.
Length = 194
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 304 IHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIW 429
+ I+SK S E++ + Q+ TW +L ++I++ W
Sbjct: 9 VSSITSKSSIAKAEIITMEEEQQRQSCCTWFHSLKVQIWIAW 50
>Z77652-11|CAI70405.1| 310|Caenorhabditis elegans Hypothetical
protein C06B3.13 protein.
Length = 310
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 63 FRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEKTDGP 206
+ E PDN + I Y + P +F+N G + + R++K + P
Sbjct: 154 YTSECEPDNHIVTYIIDNYSRLFPVLCLFLNIGIILYLSKRRKKMENP 201
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 114 LYDTVLPEKSVFVNKGRCVEMILRKEKTDGPFWPTLTKD 230
L+D V+PE+S V R VE+ L+++ G WP L D
Sbjct: 274 LWDEVIPEESRVVIGERKVEISLKQKHGTG--WPRLKFD 310
>AC024757-10|AAF59455.1| 384|Caenorhabditis elegans Hypothetical
protein Y37E11AL.1 protein.
Length = 384
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 256 LISTNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNK 435
LI NG + M K+ + + S + + + R+KNLR T L +++ YLI N
Sbjct: 203 LIFLNGGIVRMLRKQNVQQLRSLIAELTLGHDLSKIRKKNLRSATRTLIVIISAYLISNL 262
Query: 436 MTL 444
++L
Sbjct: 263 LSL 265
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 114 LYDTVLPEKSVFVNKGRCVEMILRKEKTDGPFWPTLTKD 230
L+D V+PE+S V R VE+ L+++ G WP L D
Sbjct: 274 LWDEVIPEESRVVIGERKVEISLKQKHGTG--WPRLKFD 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,148
Number of Sequences: 27780
Number of extensions: 220557
Number of successful extensions: 811
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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