Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k24
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 458 MCNACYEGYACEDQF*PH 511
           +C AC +G+ C  Q   H
Sbjct: 205 VCKACGKGFTCSKQLKVH 222


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 549 VNHPLDCPICDQGGEC 596
           +N P +CP C +   C
Sbjct: 2   INEPQECPYCRRNFSC 17


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 497 GLHTHTLHNR 468
           GLHT T HNR
Sbjct: 407 GLHTTTAHNR 416


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 638 TFVRSKGHGLILQITF 591
           TFVR +G   +LQ++F
Sbjct: 223 TFVRREGEFSVLQVSF 238


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 315 VPGTTVLQAAAQVGVEIPRFCYHERLAVAG 404
           +PG  V+    ++G+E   F Y E +  AG
Sbjct: 377 LPGIGVVYNGDEIGMEDRWFTYQETVDPAG 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,397
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)