Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k11
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...   118   7e-28
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   1.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   2.3  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   6.9  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.1  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score =  118 bits (285), Expect = 7e-28
 Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
 Frame = +2

Query: 131 HEFTVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAF 310
           ++   K+  G        KG V ++VN AS+CG T   YK L  LY++Y + +G  IL F
Sbjct: 5   YDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKY-KDRGFIILGF 62

Query: 311 PCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 487
           PCNQF  QEPG+ EEI  F  +   V F +  K++VNGDN  P++++LK ++       I
Sbjct: 63  PCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERI 122

Query: 488 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 586
           KWNF KF++N+ G  +ER+   + P  L   +E
Sbjct: 123 KWNFEKFLVNRQGQVIERYSSISKPEHLENDIE 155


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 131 HEFTVKNIKGEDVKLDVYKGHVCIIVN 211
           H+ T  N++G  + L  YKG V  I+N
Sbjct: 178 HQTTSLNLEGSPINLHAYKGTVTSIIN 204


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 161 EDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGE 283
           EDV+   YKG + +++NV   C      Y  LNEL+E   E
Sbjct: 493 EDVR-PPYKG-IILMLNVLDSCTNYVGRYTFLNELFEYLQE 531


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 742 NYIMLFYKYPFNDTHTDFVFRLQFAIKPITKLFLIKGYL 626
           +Y+   Y+ PF+   T  +  L+  +  + + FLIK YL
Sbjct: 812 SYLNSSYQTPFHAGETHLISSLRSKVDLLDRKFLIKEYL 850


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 403 LKQIEFDFTLRGKANYLFWIARL--LTSKLITRESQNAETFALSVLFIELIQLFVIVRSK 230
           LK ++FD  LR  ++YL        L  +L+   S+    +A  + F EL+ +  IVRSK
Sbjct: 529 LKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYVLYATDISFPELV-IPAIVRSK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,458
Number of Sequences: 5004
Number of extensions: 64923
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)