Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k08
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    24   3.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   4.2  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    23   7.3  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    23   7.3  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    22   9.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    22   9.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    22   9.6  

>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 112 CENGLGGVGDSHSYDSNESNEEF 44
           C  G+GG+G+ H    N  + +F
Sbjct: 195 CYGGVGGLGNVHFLSENNRSPKF 217


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  GDSHSYDSNESNEEFH 41
           G+ HSY  ++S + FH
Sbjct: 263 GNKHSYKKSDSQQSFH 278


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 7   FDHCKQTKVFKNEILRCFRCYRSCGCRQPH 96
           F H K T  + N+I +     +  G  +PH
Sbjct: 278 FQHAKATAAYNNDITKYLVQKQDIGYFEPH 307


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 106 NGLGGVGDSHSYDSNESNE 50
           N L     SHS +SNE+NE
Sbjct: 2   NRLNPFSKSHSKNSNENNE 20


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 37  KNEILRCFRCYRSC 78
           +++ L C +C++SC
Sbjct: 230 QDDALECLKCFKSC 243


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 116 RVRKWAWW 93
           R  KWAWW
Sbjct: 572 RSEKWAWW 579


>SPBC1683.13c |||transcription factor |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 618

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 16 CKQTKVFKNEILRCFRCYRS 75
          C+Q K+  + +  CF+C +S
Sbjct: 22 CRQRKIKCDRLHPCFQCVKS 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,003
Number of Sequences: 5004
Number of extensions: 5720
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)