Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k08
         (137 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113616-1|AAM29621.1|  112|Drosophila melanogaster RH63170p pro...    31   0.29 
Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma pigm...    26   6.3  
AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p pro...    26   6.3  
AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like pro...    26   6.3  
AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA...    26   6.3  
AE013599-2036|AAM68530.1| 1294|Drosophila melanogaster CG8153-PC...    26   6.3  

>AY113616-1|AAM29621.1|  112|Drosophila melanogaster RH63170p
          protein.
          Length = 112

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1  DQFDHCKQTKVFKNEILRCFRCYRSCG-CR 87
          ++F  CKQ+ +++NEIL CF     CG CR
Sbjct: 3  ERFRQCKQS-IYQNEILHCFLRLDRCGLCR 31


>Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma
           pigmentosum group Ccomplementing factor protein.
          Length = 1293

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 136 KREIDDFGCENGLGGVGDSHSYDSNESNEE 47
           K     F C  G+  + DS S D+NES+ E
Sbjct: 168 KSPAPQFDCNAGITNLSDSGSEDNNESSFE 197


>AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p
           protein.
          Length = 1293

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 136 KREIDDFGCENGLGGVGDSHSYDSNESNEE 47
           K     F C  G+  + DS S D+NES+ E
Sbjct: 168 KSPAPQFDCNAGITNLSDSGSEDNNESSFE 197


>AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like
           protein isoform a protein.
          Length = 1293

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 136 KREIDDFGCENGLGGVGDSHSYDSNESNEE 47
           K     F C  G+  + DS S D+NES+ E
Sbjct: 168 KSPAPQFDCNAGITNLSDSGSEDNNESSFE 197


>AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA,
           isoform A protein.
          Length = 1293

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 136 KREIDDFGCENGLGGVGDSHSYDSNESNEE 47
           K     F C  G+  + DS S D+NES+ E
Sbjct: 168 KSPAPQFDCNAGITNLSDSGSEDNNESSFE 197


>AE013599-2036|AAM68530.1| 1294|Drosophila melanogaster CG8153-PC,
           isoform C protein.
          Length = 1294

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 136 KREIDDFGCENGLGGVGDSHSYDSNESNEE 47
           K     F C  G+  + DS S D+NES+ E
Sbjct: 169 KSPAPQFDCNAGITNLSDSGSEDNNESSFE 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,202,792
Number of Sequences: 53049
Number of extensions: 65674
Number of successful extensions: 320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 24,988,368
effective HSP length: 26
effective length of database: 23,609,094
effective search space used: 448572786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)