Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k08
         (137 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    20   2.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    20   2.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    20   2.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   3.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   5.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   7.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    18   9.5  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 127 IDDFGCENGLGGVGDSHSYDSNE 59
           +  FG   G GG+G      SNE
Sbjct: 19  VGGFGGFGGFGGLGGRGKCPSNE 41


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 127 IDDFGCENGLGGVGDSHSYDSNE 59
           +  FG   G GG+G      SNE
Sbjct: 19  VGGFGGFGGFGGLGGRGKCPSNE 41


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 40  NEILRCFRCYRSCGCRQPHQAHFRTRNHR 126
           NE   C  C R+  C    + HF+ ++ +
Sbjct: 3   NEPQECPYCRRNFSCYYSLKRHFQDKHEQ 31


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 4/4 (100%), Positives = 4/4 (100%)
 Frame = -1

Query: 98  WWGW 87
           WWGW
Sbjct: 232 WWGW 235


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 48  NFIFKYFCLL 19
           NFI   FCLL
Sbjct: 281 NFILHLFCLL 290


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +1

Query: 19  KQTKVFKNEILRCFRCYRSCGCRQPHQAHFRTRNHRF 129
           K  +V +NE + C      CG R       R   + F
Sbjct: 609 KDDRVEQNEPIGCKDASSYCGLRDRKYPDARAMGYPF 645


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 98  KPIFAPEIIDFPL 136
           KP+ A E +D+ L
Sbjct: 168 KPVVAEETVDYML 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,261
Number of Sequences: 438
Number of extensions: 372
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)