Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k05
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 342 RSR*YDFRHYQHTYSRQ 392
           RSR +DF+H    YSR+
Sbjct: 218 RSRTHDFQHTSSRYSRE 234


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -1

Query: 601 DNISCQRXNGLQGNDCGSNDSIASL*TNHHRQNHIGI*HTGHEED 467
           +N +    N    ND G+ +  ++   N     H G+ H GH  D
Sbjct: 242 NNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHHPD 286


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 342 RSR*YDFRHYQHTYSRQ 392
           R+R +DF+H    YSR+
Sbjct: 218 RNRTHDFQHTSSRYSRE 234


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 TERCGSKTRWRCPK 206
           T+R  SK +WR PK
Sbjct: 28  TQRTMSKIQWRKPK 41


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 114 LRR*KNHGRGASIRSNSTERCGSKTR 191
           LRR K+ G      SN+T+  G+K R
Sbjct: 315 LRREKDRGSREYPTSNATDTDGTKER 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,504
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)