Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20k02
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 1.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.2
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 27 3.2
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.2
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 26 5.6
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 7.5
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 9.9
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 9.9
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 9.9
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 25 9.9
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 9.9
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 431 RPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYVARDPRDVAVSLHFAV 610
R ++ F+ T +P P YV+ H P S P +LD ++ P V HF +
Sbjct: 108 RAKEDPNFQIHSTPSRMP-PHYVQPHPPFSVFPAPILDVREL----TKPGAVKRVFHFEL 162
Query: 611 KLFGY 625
+ Y
Sbjct: 163 DVSNY 167
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 464 ETLPNLPSPRYVKSHLPLSRLPPALLDT 547
ET+P+ P P S LP+ PPA L+T
Sbjct: 197 ETVPSTPQPA---SSLPIPSSPPAALET 221
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 419 PQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSR 523
PQ +P R +SFET + PR + SH+PL R
Sbjct: 188 PQVYQPA-RDFLKSFETNKDNSRPRILLSHVPLFR 221
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 137 YYKGYSRPFVRVGAPGYLATPGYQDHAED 223
YY Y P GA GYL +P + ED
Sbjct: 383 YYLQYLTPLRESGAIGYLGSPAISNVGED 411
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 158 AGCTLCSISSELNPLPLSQV*FHVENGAPYFFSF 57
A C L S E LP V ++G PY+F+F
Sbjct: 47 ASCGLTSEDLEAGELPPVDVLTFKKSGKPYYFAF 80
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 182 GYLATPGYQDHAEDIYNLEIRPDDI-WVIPFSRSGTTWLQELVWLVNNNLDYVAA 343
G ++T GY D N W L + WLVN+N+ YV A
Sbjct: 436 GIISTAGYSSPLADYGNTYYNDHHFHWGYHIYACAVIGLLDPSWLVNDNIRYVNA 490
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 203 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNN 325
YQDH + I++ + P D ++ R TT + E +L+N +
Sbjct: 195 YQDHIDRIFDPQYIPSDQDIL-HCRIKTTGISEETFLLNRH 234
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 347 SQPLSKRYAYIEYVTQKSDAAKKMPQSIRPEQRATFESFET 469
+ P+SK YAY++ V + +D K P S+ ++++ + S ++
Sbjct: 373 TDPVSKVYAYVKGVAEGAD---KQPFSLTFQRKSLWTSLDS 410
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 450 RLRASKLCQIYRLRDMLKVTYRCHVC 527
+++ + C+ L+D LK+ Y VC
Sbjct: 378 QIKIPEFCRSVNLKDQLKIDYTLEVC 403
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 483 GRFGKVSKLSNVALCSGLMDCG 418
G +G +N++LC MDCG
Sbjct: 124 GFYGAFQYKNNISLCMEYMDCG 145
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 595 RHGHVSRVAGYVEYLCSIQQSW 530
R GHV+ +AG+ E + ++ + W
Sbjct: 101 RPGHVALIAGFYEDVSAVTKGW 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,123
Number of Sequences: 5004
Number of extensions: 60192
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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