Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20k02
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +2

Query: 203 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSKRYAYIE 382
           YQ  + D      + DD     FS S  TWL+     VN N   V  A++   K   +  
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAGFSSSSNTWLR-----VNENYKTVNLAAEKKDKNSFFNM 462

Query: 383 YVTQKSDAAKKMP 421
           +  +K  + KK P
Sbjct: 463 F--KKFASLKKSP 473


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +2

Query: 203 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSKRYAYIE 382
           YQ  + D      + DD     FS S  TWL+     VN N   V  A++   K   +  
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAGFSSSSNTWLR-----VNENYKTVNLAAEKKDKNSFFNM 462

Query: 383 YVTQKSDAAKKMP 421
           +  +K  + KK P
Sbjct: 463 F--KKFASLKKSP 473


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 305 VWLVNNNLDYVAAASQPL 358
           +WL+ + LD+   AS PL
Sbjct: 679 IWLLGSRLDWEDHASSPL 696


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 GLISRLYISSAWSWYPGVARYPGA 175
           G ++ LY+ S   W P +  Y  A
Sbjct: 90  GGVTELYVPSEHIWLPDIVLYNNA 113


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 240 LGLMTYGSSLSLDLGQHGFKN*YGWS 317
           LGLM  GSS+  D G++  +   G S
Sbjct: 376 LGLMPSGSSVHSDSGENNSRGHSGQS 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,327
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)