Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j22
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    24   3.1  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    23   5.4  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    23   5.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   7.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    23   7.1  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    23   7.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    22   9.4  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    22   9.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    22   9.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    22   9.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    22   9.4  

>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 99  DHN*DHNQFAILQKLVFPKTK 37
           DHN D   +     LVFPKT+
Sbjct: 232 DHNGDIGDYTTAVTLVFPKTE 252


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 126 FKCIVINKKNQ 158
           F CI +NKKNQ
Sbjct: 102 FTCIALNKKNQ 112


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 29  PGNFVFGKTSF 61
           PGN++FG+T +
Sbjct: 123 PGNYIFGRTEY 133


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 39  LSSGRPASEV*RTDCDLNYDLCLXFVGLVFKCIV 140
           L+SG P  +  R   +LN+++ L F+ L   C V
Sbjct: 435 LNSGAPPLKRSRITRNLNWNVYLNFIILFSMCFV 468


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 25  RPWKLCLREDQLLKYSELI 81
           R WK+   ED+L K +E I
Sbjct: 578 RDWKIAQLEDKLAKLTEAI 596


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 111

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 52 LPEDKVSRGVH 20
          LPED  SRGVH
Sbjct: 66 LPEDHPSRGVH 76


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 154 FFLLITIHLNTRPTN 110
           FF  ITI+  TRP N
Sbjct: 463 FFYTITINAGTRPPN 477


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 40  CLREDQLLKYSELIVI 87
           C+RED L+KY+  +++
Sbjct: 113 CMREDGLVKYTNELLL 128


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 87  LNYDLCLXFVGLVFKCIVINKK--NQLD 164
           L+YDL   F+GL   CI    K  N LD
Sbjct: 715 LSYDLWYIFLGLFIICICEGGKISNPLD 742


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 8   ASEDVNAPGNFVF 46
           A+++ N PGNF+F
Sbjct: 599 ATDENNEPGNFIF 611


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 81  CDLNYDLCLXFVGLVFKCIVINK 149
           C+  Y LC+   G+V+   V+NK
Sbjct: 682 CNNAYLLCISSSGMVYAWNVVNK 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,699
Number of Sequences: 5004
Number of extensions: 6657
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)