Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j22
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0023 + 10702040-10702364,10702530-10702747,10703643-107041...    26   4.7  
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954...    25   8.3  

>06_02_0023 +
           10702040-10702364,10702530-10702747,10703643-10704190,
           10704272-10704523,10704611-10704721,10704812-10704893,
           10704969-10705061,10705146-10705340
          Length = 607

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 19  CERPWKLCLREDQLLKYSELIVILIMICV 105
           CE PW + L  D  L+ SEL + +I + V
Sbjct: 297 CELPWPMRLMHDWYLRASELDLGMITVHV 325


>04_04_0173 -
           23294511-23294601,23294719-23294849,23295160-23295483,
           23296016-23296147,23296225-23296373,23296536-23296670,
           23296997-23297090,23297199-23297318,23298096-23298182,
           23298273-23298386,23299089-23299270,23299960-23300023,
           23300191-23300337,23300636-23300845,23301048-23301217,
           23301355-23301477,23301589-23301661,23301765-23301857
          Length = 812

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 117 QQIXNTDHN*DHNQFAILQKLVFPKTK 37
           ++I +TD     + F+ILQ LVFP  K
Sbjct: 126 ERICDTDKVVRESLFSILQSLVFPSLK 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,300
Number of Sequences: 37544
Number of extensions: 35857
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)