Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j22
         (166 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   2.4  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    19   4.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic
          acetylcholine receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 36 FPGAFTSSEAK 4
          FPGA  +SEAK
Sbjct: 12 FPGASANSEAK 22


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 31  WKLCLREDQLLKY 69
           W+L LR  +++KY
Sbjct: 91  WQLILRRYKIMKY 103


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 111 FVGLVFKCIVI 143
           FVG +  CIVI
Sbjct: 48  FVGNIITCIVI 58


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 78  DCDLNYDLCLXFVGLVFKCIV 140
           D D+N +  +     + KC+V
Sbjct: 106 DTDVNKEYAIRGNSAILKCVV 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,765
Number of Sequences: 438
Number of extensions: 433
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)