Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j21
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    66   3e-12
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    65   1e-11
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    65   1e-11
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    58   2e-09
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    49   6e-07
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   2.6  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   2.6  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   4.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.0  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   8.0  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   8.0  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
 Frame = +1

Query: 487 FCSVCECLRPPRAWHCDTCDICILKRDHHCTFFACCVGYYNHRFFICFTFYI---FIAMM 657
           FC  C+  +  R+ HC  C+ CIL+ DHHC +F  CVG+ NH+FF    FY+    I ++
Sbjct: 98  FCEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNLYSICVL 157

Query: 658 YSFY 669
           YS +
Sbjct: 158 YSTF 161


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 26/67 (38%), Positives = 37/67 (55%)
 Frame = +1

Query: 487 FCSVCECLRPPRAWHCDTCDICILKRDHHCTFFACCVGYYNHRFFICFTFYIFIAMMYSF 666
           +C  C  ++PPR++HC  C  CI + DHHC +   CVG  NHR F+ F F +   +   F
Sbjct: 401 YCLKCFQVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIPIYF 460

Query: 667 YYNVIFL 687
           Y    +L
Sbjct: 461 YVAFYYL 467


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +1

Query: 487 FCSVCECLRPPRAWHCDTCDICILKRDHHCTFFACCVGYYNHRFFICFTFYIFIAMMY 660
           +C  C   RPPRA HC  CD C+   DHHC +   C+G  N+R++  F   + ++ +Y
Sbjct: 183 YCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLSALY 240


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +1

Query: 490 CSVCECLRPPRAWHCDTCDICILKRDHHCTFFACCVGYYNHRFFICF 630
           CS C+  +P R+ HC  C+IC+ K DHHC +   CVG  N R+F  F
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLF 206


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 24/67 (35%), Positives = 31/67 (46%)
 Frame = +1

Query: 490 CSVCECLRPPRAWHCDTCDICILKRDHHCTFFACCVGYYNHRFFICFTFYIFIAMMYSFY 669
           C  C+C  P R+ H      CI K DH+C+F    V + N +FF  F FY F A      
Sbjct: 115 CGTCKCWLPDRSHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFYGFSAACMVLI 174

Query: 670 YNVIFLS 690
              I +S
Sbjct: 175 STAIMIS 181


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 22  NISLHLKYRVYVCDLHSLNNCLELKKYI 105
           +ISLH K+ +YV DL   +   ++KK+I
Sbjct: 82  DISLHTKFNLYVDDLLKKSEKGQIKKFI 109


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 22  NISLHLKYRVYVCDLHSLNNCLELKKYI 105
           +ISLH K+ +YV DL   +   ++KK+I
Sbjct: 82  DISLHTKFNLYVDDLLKKSEKGQIKKFI 109


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 328 PTVVTQWTMSHFIHMFCATFLLHNIIGNMIYGMLTDTSIKGK--FLNSHKKDGWTFCSV 498
           PT+V Q   ++ I        L+  +G +I+G      I G   ++N    D  TF SV
Sbjct: 232 PTIVDQLVSANVIDTPAFGIYLNEDVGELIFGGYDKAKINGSVHWVNISSSDDSTFYSV 290


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 569 IIVLFLLVVWDIITIDSSFVLHSIYSLL*CTHFIIM*YFCQFS 697
           + + +  ++W ++ I S  V+ SIY  L  T+++ + Y C F+
Sbjct: 458 VFIWYAQILWYLVFIVS--VILSIYFQLGSTYWVTLSYLCTFT 498


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 523 AWHCDTCDICILKRDHHCTFFAC 591
           ++HCD C IC + R     +F C
Sbjct: 223 SYHCDDCGICRIGRGLGDDYFHC 245


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +1

Query: 439 SIKGKFLNSHKKDGWTFCSVCECLRPP-----RAWHCDTC 543
           +I  KFL++     WT   VC   R P     R  HC  C
Sbjct: 156 NITSKFLDTETPPDWTDSEVCLRCRTPFTFTNRKHHCRNC 195


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 406 GNMIYGMLTDTSIKGKFLNSHKKDG 480
           G++I  + TD+SI GK L+ +  DG
Sbjct: 259 GDLISRLTTDSSIVGKSLSMYLSDG 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,023
Number of Sequences: 5004
Number of extensions: 65336
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)