Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j21
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.53 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 319 HIVRNTKMLVLTITILSNTNCVPVFSSIVYFSQIL 215
           ++    ++ +   TI + + C+P+   I Y+SQI+
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIV 235


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 291 TSIFVFRTMCSTANRCNTMDNV 356
           T   VFR   + AN+ N+ DNV
Sbjct: 138 TDEVVFRQTKAIANKINSWDNV 159


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 130 LCITMLVAFLLHEDKCRQ 183
           L + +L+ FLLH  +C Q
Sbjct: 6   LKLLVLLTFLLHPSRCTQ 23


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 130 LCITMLVAFLLHEDKCRQ 183
           L + +L+ FLLH  +C Q
Sbjct: 6   LKLLVLLTFLLHPSRCTQ 23


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 349 TMSHFIHMFCATFLLHNIIGNMIYGMLTDTSI 444
           TM+H  + FC  F   N+I      M    S+
Sbjct: 36  TMTHTTNAFCLPFCGPNVINPFFCDMSPSLSL 67


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 310 RNTKMLVLTITILSNTNCVP 251
           R  ++LV T+ ILS   C P
Sbjct: 180 RRARLLVATVWILSFVICFP 199


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 466 HKKDGWTFCSVCECLRP 516
           H +  WTFC   E + P
Sbjct: 518 HGRKTWTFCGTPEYVAP 534


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,508
Number of Sequences: 438
Number of extensions: 4596
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)