Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j19
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    31   0.21 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    30   0.37 
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    29   0.49 
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    28   1.5  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    28   1.5  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    27   3.4  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   4.5  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
 Frame = +2

Query: 236 SLKIQINKFFIKMTKSEYSLLKDEIILRASGTPRHGEILRSVKEIYKQSINSKRRYEQIE 415
           SL I+ NK   +    EYS+L+  +        + GE+L   +++  +S  +K   E   
Sbjct: 558 SLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGEVL---EQVVAESEAAKNMVESSN 614

Query: 416 TIAQLLK--VLEIRDVLSENSIEPLKEVARRLQDNNELLRKITDYELISVSKKDLNNTVS 589
              Q LK  V +    L++  ++ L E+ +RL   +E  + ++  +L  +  K  N+   
Sbjct: 615 ASIQQLKSEVADKEQTLAQLHLQ-LDEMTQRLVSLDEESKAVSQRKL-DLEYKINNSKTQ 672

Query: 590 SFTATHD 610
             TAT +
Sbjct: 673 LATATEE 679


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
 Frame = +2

Query: 386  NSKRRYEQIETIAQLLKVLEIRDVLSENSIEPLKEVARRLQDNNE-LLRKITDYE----L 550
            N K++YE ++     L +  ++DV  + + + L +  R L  N+E LLR+   Y+    L
Sbjct: 1169 NYKKKYEGLQ-----LDLEGLKDV--DTNFQELSKKHRDLTFNHESLLRQSASYKEKLSL 1221

Query: 551  ISVSKKDLNNTVSSFTATHDE 613
             S   KDL+N VSS T   +E
Sbjct: 1222 ASSENKDLSNKVSSLTKQVNE 1242


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 434 KVLEIRDVLSENSIEPLKEVARRLQDNNELLRKITDYELISVSKKD 571
           K L++  + S+N + P   VAR +Q   + L K  D++L+ V   D
Sbjct: 311 KTLKVGIMRSDNVVNPQPPVARAMQMAIDQLSKNPDFDLVDVEPLD 356


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +2

Query: 308 IILRASGTPRHGEILRSVKEIYKQSINSKRRYEQIETIAQLLKVLEIRDVLSENSIEPLK 487
           II    G P H E L       KQSI    R    E +  L  +LE++D   E   E L 
Sbjct: 218 IISEQEGIPGHSEQLLDYN---KQSIQLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALN 274

Query: 488 EVARRLQDNNELL 526
           ++    ++  ELL
Sbjct: 275 KILHPAKNLVELL 287


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +2

Query: 347 ILRSVKEIYKQSINSKRRYEQIETIAQL--LKVLEIRDVLSENSIEPLKEVARRL--QDN 514
           +LR+V++   ++I+   +   I  + Q   L  L+  D   +N ++ L++V   L  ++ 
Sbjct: 49  LLRNVRKELMENIHFTEKVTDIYRVWQTGDLANLDGLDKKEQNMLKYLRQVRDALYSEEF 108

Query: 515 NELLRKITDYELISVSKKDLNNTVSS 592
              ++KIT    +S SKKDL+  V S
Sbjct: 109 RSHVQKITGCGPLSASKKDLSVNVYS 134


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/74 (20%), Positives = 33/74 (44%)
 Frame = +2

Query: 320 ASGTPRHGEILRSVKEIYKQSINSKRRYEQIETIAQLLKVLEIRDVLSENSIEPLKEVAR 499
           ++GT   G +  + +      + ++RR   +    +L +  ++  +L ENS++ +     
Sbjct: 461 SAGTSDFGLVEETTESASAYFLEARRRRNAVRKDPKLSRQPQVGRLLEENSVDDIPLATM 520

Query: 500 RLQDNNELLRKITD 541
             +D  E L K  D
Sbjct: 521 LNEDPREALLKYAD 534


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 413 ETIAQLLKVLEIRDVLSENSIEPLKEVARRLQDNNELLRKITDYELISVSKKDL 574
           E +A LL  LE R+ ++  S EPL+ +      +N  L++        +++KD+
Sbjct: 26  EAVADLLSFLEDRNEVNFYSEEPLRALTILAYSDNLDLQRSAALAFAEITEKDV 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,145
Number of Sequences: 5004
Number of extensions: 43506
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)