Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j19
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    30   0.018
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
 Frame = +2

Query: 260 FFIKMTKSEYSLLKDEIILRASGTPRHGEILRSVKEIYKQS----INSKRRYEQIETIAQ 427
           + +K+  +EY+LL   +I         G  +  ++EIY ++    ++++RR       A+
Sbjct: 467 YAMKVNNAEYALLTAIVIFSERPNLLEGWKVEKIQEIYLEALRAYVDNRRRPNPGTVFAR 526

Query: 428 LLKVL-EIRDVLSENS 472
           LL VL E+R + ++NS
Sbjct: 527 LLSVLTELRTLGNQNS 542


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 490 FFQWLNAIFRQYISYFQHFQQLRNRFNLFISSFRVNTLFIYFFYRPQNL 344
           F   LN + R+  +YF   +             R NTLF+    RPQ++
Sbjct: 318 FGHHLNRLGREISTYFTFTRPCGITLTFHEILKRANTLFVLTLQRPQDV 366


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 690 VSNSLSFFLGLKLPPNGFNFITLSIFSSCVAVNDDTVLFRSFFD 559
           + N+ SF  G  +  NG  F+ L   S    VN+  VL R  FD
Sbjct: 304 ILNTQSF--GKVVSKNGVLFLGLVGNSGIACVNEHQVLQRESFD 345


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 439 HFQQLRNRFNLFISSFRVNTLFIYFFYRPQNLT 341
           H  +LRN  N+FI S  V  L +     P + T
Sbjct: 92  HTSKLRNVTNMFIVSLAVADLMVGLAVLPFSAT 124


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  YYLIQVY*CLCAFVNLKKSSF 141
           YYLIQ+Y   C  V +   SF
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSF 263


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  YYLIQVY*CLCAFVNLKKSSF 141
           YYLIQ+Y   C  V +   SF
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSF 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,270
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)