Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20j10
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 70 1e-12
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 55 4e-08
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.4
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.2
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 5.6
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 28 5.6
06_03_0355 + 19822110-19824491 28 7.4
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 9.8
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.8
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 70.1 bits (164), Expect = 1e-12
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Frame = +2
Query: 263 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 442
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 443 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 613
RG +L VT L + P A+E AL LE V + + + S ND
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDP 206
Query: 614 HLVDYLSGEFLD 649
L D++ EFL+
Sbjct: 207 QLTDFVESEFLE 218
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 55.2 bits (127), Expect = 4e-08
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +2
Query: 296 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 466
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 467 TDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFL 646
T L + P E G AL L + V C ND L D++ EFL
Sbjct: 194 TPLTEFDHP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFL 243
Query: 647 D 649
+
Sbjct: 244 E 244
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 515 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 622
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 323 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 439
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 244 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 95
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 445 GKADRLRNRPHHVQGPRKHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 600
G + + ++P ++Q P +H P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
>06_03_0355 + 19822110-19824491
Length = 793
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 371 AKLFFDAATEEREHATKLIDYLL-MRGKLTGSVTDLITYRAPANTSWESGASALEHALKL 547
A +F++ E + YL M + + L + R W++ EH L +
Sbjct: 487 ASMFYEQKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRRFEHDLNV 546
Query: 548 ESDVTNSIREVIKTCESSFNDY 613
+ + R +K +SF++Y
Sbjct: 547 MAQLVTGYRRALKQNRASFDEY 568
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 475 HHVQGPRKHVVGERRISPRAR 537
H+ GPR H+ G RR PRAR
Sbjct: 18 HYATGPRTHLPGPRR-KPRAR 37
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 307 VNPVLSHGGLLLDRYGEPPRLREA 378
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,000
Number of Sequences: 37544
Number of extensions: 351180
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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