Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20j04
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    39   8e-04
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   2.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.0  

>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 315 SSFFFGYAVMLVPADLLLRKIG-GKIVCTAIFVVNGALCVAMPTIVNKGGWVAASNAQLF 491
           ++F+ GY V   PA LLL++    K +C  +F+V     + M ++ N  G++A    ++ 
Sbjct: 107 TAFYLGYLVFEFPASLLLQRFPLSKTLC--VFLVIWGFLLCMTSVANYPGFIA---LRVL 161

Query: 492 MGMAHSCFSTVYETLIERWLPPNER 566
           +GM  S  S  +  L  +W   +E+
Sbjct: 162 LGMMESAASPGFILLTAQWYKRSEQ 186


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 312 MSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVNKGGWVAASNA-QL 488
           ++ F+ GY +  VP++L++  I  +I  + I +  G +      +  K G   +  A + 
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRF 192

Query: 489 FMGMAHSCFSTVYETLIERW 548
           F+G+A S         + RW
Sbjct: 193 FLGVAESGLWPGLAYYMSRW 212


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 469 ATHPPLLTIVGIATHRAPLTTNMA 398
           A HP L  I+G+ +HR P+   +A
Sbjct: 536 ADHPSLSLIIGMISHRLPILLILA 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,006
Number of Sequences: 5004
Number of extensions: 68214
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)