Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20i08
(230 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 29 0.11
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 28 0.19
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 4.1
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 23 5.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 23 5.4
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 22 9.5
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 22 9.5
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 22 9.5
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 22 9.5
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 22 9.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 22 9.5
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 22 9.5
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 28.7 bits (61), Expect = 0.11
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 78 LNIRYSNILENI*QIRKKKIFLEKTNKKCNQKCF 179
L +RY+N+ N+ + +KIF+ K + +KC+
Sbjct: 170 LPVRYANVQSNLIKYWLQKIFIGKVKRSIPEKCW 203
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.9 bits (59), Expect = 0.19
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 127 FRICYIFSSMFEYRILSGRCYRC 59
F CY+FSS F Y+ S R Y C
Sbjct: 149 FAFCYLFSSYFSYK--SSRQYTC 169
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 166 LHFLLVFSKKIFFFRICYIF 107
+ F L FS F ICY+F
Sbjct: 20 IFFTLTFSLSNLFLAICYLF 39
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 51 PLVHL*HRPLNIRYSNILENI*QIRKKKIFLEKTNKK 161
PL + HRP+ Y + + + +KK +F E N++
Sbjct: 833 PLYYSDHRPIYATYEANIVKVDREKKKILFEELYNQR 869
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 86 NIKRSVLQMHQRPVHILQRG*RSILRGY 3
+++R ++H RPV + Q RS + Y
Sbjct: 253 DVERRASELHSRPVTVFQEPQRSASQPY 280
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -1
Query: 122 YLLYIFEYV*VSNIKRSVLQMHQRPVHI 39
Y+ Y+F Y+ + R + H P H+
Sbjct: 652 YMTYVFHYLPFFIMGRQLFLHHYLPAHL 679
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 49 GLWCICSTDRLIFDTQTY 102
G WC+ T LIF T Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 49 GLWCICSTDRLIFDTQTY 102
G WC+ T LIF T Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 49 GLWCICSTDRLIFDTQTY 102
G WC+ T LIF T Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 92 VSNIKRSVLQMHQRPVH 42
+ +KR+VL H+ P+H
Sbjct: 94 LKQVKRTVLLPHRSPIH 110
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 81 NIRYSNILENI*QIRKKKIFLEKTNKK 161
N+RY NI+ + ++RK+ F + + +K
Sbjct: 263 NLRYQNIVAELSEMRKQYEFSQVSFEK 289
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 49 GLWCICSTDRLIFDTQTY 102
G WC+ T LIF T Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,688
Number of Sequences: 5004
Number of extensions: 11426
Number of successful extensions: 42
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -