Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20h11
(458 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens ... 36 0.088
U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human nucleotid... 34 0.20
BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding prot... 34 0.20
BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding prot... 34 0.20
BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein. 34 0.20
BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding prot... 34 0.20
BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding prot... 34 0.20
AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide bi... 34 0.20
AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding prot... 34 0.20
AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide bin... 34 0.20
>AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens
cDNA FLJ10161 fis, clone HEMBA1003555, moderately
similar to NUCLEOTIDE-BINDING PROTEIN. ).
Length = 271
Score = 35.5 bits (78), Expect = 0.088
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 3 AKIPFLGSVPIDPRVGRLAGQGLCAVKELPDS 98
A +PFLGSVP+DP + R +G +++E P S
Sbjct: 218 AGVPFLGSVPLDPALMRTLEEGHDSIQEFPGS 249
>U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human
nucleotide-binding protein mRNA, complete cds. ).
Length = 320
Score = 34.3 bits (75), Expect = 0.20
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 6 KIPFLGSVPIDPRVGRLAGQGLCAVKELPDSKTSKVFGELVTLLGENSN 152
++P LG VP+DP +G+ +G + PDS + + ++ + E N
Sbjct: 260 EVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCN 308
>BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.20
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 6 KIPFLGSVPIDPRVGRLAGQGLCAVKELPDSKTSKVFGELVTLLGENSN 152
++P LG VP+DP +G+ +G + PDS + + ++ + E N
Sbjct: 260 EVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCN 308
>BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.20
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 6 KIPFLGSVPIDPRVGRLAGQGLCAVKELPDSKTSKVFGELVTLLGENSN 152
++P LG VP+DP +G+ +G + PDS + + ++ + E N
Sbjct: 260 EVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCN 308
>BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein.
Length = 309
Score = 34.3 bits (75), Expect = 0.20
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 6 KIPFLGSVPIDPRVGRLAGQGLCAVKELPDSKTSKVFGELVTLLGENSN 152
++P LG VP+DP +G+ +G + PDS + + ++ + E N
Sbjct: 249 EVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCN 297
>BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 34.3 bits (75), Expect = 0.20
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 3 AKIPFLGSVPIDPRVGRLAGQGLCAVKELPDS 98
A +PFLGSVP+DP + R +G ++E P S
Sbjct: 218 AGVPFLGSVPLDPALMRTLEEGHDFIQEFPGS 249
>BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 34.3 bits (75), Expect = 0.20
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 3 AKIPFLGSVPIDPRVGRLAGQGLCAVKELPDS 98
A +PFLGSVP+DP + R +G ++E P S
Sbjct: 218 AGVPFLGSVPLDPALMRTLEEGHDFIQEFPGS 249
>AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide
binding protein 1 (E.coli MinD like) ) protein.
Length = 265
Score = 34.3 bits (75), Expect = 0.20
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 3 AKIPFLGSVPIDPRVGRLAGQGLCAVKELPDS 98
A +PFLGSVP+DP + R +G ++E P S
Sbjct: 212 AGVPFLGSVPLDPALMRTLEEGHDFIQEFPGS 243
>AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) variant protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.20
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 6 KIPFLGSVPIDPRVGRLAGQGLCAVKELPDSKTSKVFGELVTLLGENSN 152
++P LG VP+DP +G+ +G + PDS + + ++ + E N
Sbjct: 260 EVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCN 308
>AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide
binding protein protein.
Length = 271
Score = 34.3 bits (75), Expect = 0.20
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 3 AKIPFLGSVPIDPRVGRLAGQGLCAVKELPDS 98
A +PFLGSVP+DP + R +G ++E P S
Sbjct: 218 AGVPFLGSVPLDPALMRTLEEGHDFIQEFPGS 249
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,076,870
Number of Sequences: 237096
Number of extensions: 762658
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -