Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20h09
         (243 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809...    27   2.8  
05_05_0291 + 23882579-23882660,23883073-23883214,23883310-238834...    27   2.8  
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529...    26   3.7  
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465...    25   8.5  

>08_02_0702 -
           20179838-20180040,20180397-20180464,20180642-20180970,
           20181058-20181258,20181369-20181501,20181576-20181619,
           20181694-20181753,20181872-20181931,20182840-20182921,
           20183292-20183368,20183649-20183726,20183997-20184143,
           20184189-20184254,20184376-20184417,20184513-20184992
          Length = 689

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 45  GLAVYANPENLEKYKTYEKRPLEENTHSS 131
           GL    NP NL  YK+ + RP+ +  HSS
Sbjct: 380 GLNHSGNPSNLNSYKSSDMRPIWDG-HSS 407


>05_05_0291 +
           23882579-23882660,23883073-23883214,23883310-23883400,
           23883555-23883632,23883764-23883844,23883934-23884023,
           23884658-23884723,23884883-23884987,23885127-23885219
          Length = 275

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 3   PLHXYKAYENFILPGLAVYANPENLEKYKTYEKRPLEENTHSSPFVXRT 149
           PLH   A       G +   +PEN +++K  EKR +  N     F   T
Sbjct: 11  PLHLAAAAAAASAEGGSRCLDPENFKEFKLVEKRQISHNVAKFRFALPT 59


>03_02_0055 -
           5295466-5295476,5295519-5296635,5296760-5296855,
           5297097-5297263,5297345-5297519,5297521-5297699,
           5298004-5298109
          Length = 616

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 57  YANPENLEKYKTYEKRPLEENTHSSPFVXRTMDC 158
           Y    N+E   TY  RPL    HSS  +  TM C
Sbjct: 46  YDYSANIEASDTYILRPLFAGLHSSSSLMYTMIC 79


>01_06_1120 -
           34645676-34645768,34645880-34645966,34646443-34646508,
           34647126-34647215,34647317-34647397,34647598-34647675,
           34647788-34647878,34647969-34648110,34648479-34648590
          Length = 279

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 63  NPENLEKYKTYEKRPLEENTHSSPFVXRT 149
           +PEN +K+K  EK+ +  N     F   T
Sbjct: 41  DPENFKKFKLVEKKQISHNVARFKFALPT 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,801,965
Number of Sequences: 37544
Number of extensions: 85648
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)