Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20h09
         (243 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004517-1|AAH04517.1|  267|Homo sapiens mitochondrial ribosomal...    29   2.1  
AL589765-9|CAI17171.1|  267|Homo sapiens mitochondrial ribosomal...    29   2.1  
AB049636-1|BAB40841.1|  267|Homo sapiens mitochondrial ribosomal...    29   2.1  

>BC004517-1|AAH04517.1|  267|Homo sapiens mitochondrial ribosomal
           protein L9 protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 30  NFILP-GLAVYANPENLEKYKTYEKRPLEENTHSSPFVXR----TMDCLHRLVLXVTMXN 194
           N +LP GLAVYA+PEN + ++  E++ L +         +    T+  L    L V M N
Sbjct: 121 NRLLPQGLAVYASPENKKLFE--EEKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKN 178

Query: 195 SEPWTLQP 218
           +  W L P
Sbjct: 179 NVKWELNP 186


>AL589765-9|CAI17171.1|  267|Homo sapiens mitochondrial ribosomal
           protein L9 protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 30  NFILP-GLAVYANPENLEKYKTYEKRPLEENTHSSPFVXR----TMDCLHRLVLXVTMXN 194
           N +LP GLAVYA+PEN + ++  E++ L +         +    T+  L    L V M N
Sbjct: 121 NRLLPQGLAVYASPENKKLFE--EEKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKN 178

Query: 195 SEPWTLQP 218
           +  W L P
Sbjct: 179 NVKWELNP 186


>AB049636-1|BAB40841.1|  267|Homo sapiens mitochondrial ribosomal
           protein L9 (L9mt) protein.
          Length = 267

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 30  NFILP-GLAVYANPENLEKYKTYEKRPLEENTHSSPFVXR----TMDCLHRLVLXVTMXN 194
           N +LP GLAVYA+PEN + ++  E++ L +         +    T+  L    L V M N
Sbjct: 121 NRLLPQGLAVYASPENKKLFE--EEKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKN 178

Query: 195 SEPWTLQP 218
           +  W L P
Sbjct: 179 NVKWELNP 186


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,938,709
Number of Sequences: 237096
Number of extensions: 542329
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1388364868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)