Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20h09
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   8.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 42  PGLAVYANPENLEKYKTYEKRPLEENTHSSPFVXRTMD 155
           P   VY NP+  +     +++    N ++SP    + D
Sbjct: 105 PQHVVYGNPQQQQLAAETQQQQQHNNGYASPMSTSSYD 142



 Score = 19.8 bits (39), Expect = 5.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 108 EDVFHRFYIFPNFLDWHTQQDL 43
           E++ HR   F N  +  +++DL
Sbjct: 336 EELIHRLVYFQNEYEQPSEEDL 357


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 57  YANPENLEKYKTYEKR 104
           Y N +++EK+  Y KR
Sbjct: 309 YPNNQDIEKFLNYLKR 324


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 42  PGLAVYANPENLEKYKTYEKRPLEENT 122
           P  +V    +N  K+ + EKR  ++NT
Sbjct: 439 PNASVTPYNKNYTKFCSTEKRLTKQNT 465


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 46  VLLCMPIQKIWKNIKPMK 99
           VL+C+ + + +  IKP++
Sbjct: 128 VLVCISMDRYYAVIKPLQ 145


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 87   KTYEKRPLEENTHSSP 134
            +T + +P   NT+S+P
Sbjct: 1293 QTIQTQPSRNNTYSTP 1308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,064
Number of Sequences: 438
Number of extensions: 1163
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)