Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20g22
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 242 SYIKCRFNQIDRQTDSRTG 186
           ++I C+F +I  + D RTG
Sbjct: 366 AHIACKFAEIKEKCDRRTG 384


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 242 SYIKCRFNQIDRQTDSRTG 186
           ++I C+F +I  + D RTG
Sbjct: 77  AHIACKFAEIKEKCDRRTG 95


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 380 AAFYLVLASIVRYI 339
           AAF L+L SI+RY+
Sbjct: 317 AAFSLMLTSILRYL 330


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -1

Query: 313 HSNS*TSFLLTFFQIFYLKWLSC*VT*NVASTK*TDRLTAEQATLLVTVSTREH 152
           H N+ T  +  + ++ +L WL C +  +  S K        Q    VT +++ H
Sbjct: 320 HRNADTHEMSEWVKVVFLYWLPCILRMSRPSDKEEREAQKSQKPSPVTGASKSH 373


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 106 VAVLGVPLPCICSSESV 156
           +AV G+P PC C +  +
Sbjct: 470 MAVSGLPEPCRCHARCI 486


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 106 VAVLGVPLPCICSSESV 156
           +AV G+P PC C +  +
Sbjct: 470 MAVSGLPEPCRCHARCI 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,379
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)