Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20g11
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    29   0.87 
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   6.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   8.1  

>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 337 ASSHFDRNVVPYARWVGFAAMVVFCLAAVIFPMGFHVDEIGGQPYQLPNSHQVGISYILF 516
           ++S+   N  P A+ +G      F    V       +D I G   +L +SH     Y++ 
Sbjct: 246 SNSYLRYNRDPIAKLIGLVE-AYFSPDTVDDEFTLAIDAINGS--RLKHSHYKQYHYVVQ 302

Query: 517 VLSLWITVISELFA 558
            L LW+ ++ E+F+
Sbjct: 303 SLHLWLLIMGEIFS 316


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -1

Query: 240 LRSVV*SHARPHKT*TSVTMAKTSAAMKSVADITVNLSIFVNKIHTS*I*NYNFRLQE 67
           L+S+   H RP+ T     +AK S  + +    TVN+  + ++     + N  + + E
Sbjct: 43  LKSIYDYHVRPYGTVVQSQIAKASPIVDAAKQATVNVKSYYDEHAKPKVENIRYEVNE 100


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 380 GLVLQQW-LYSA*RQSYFPWVSTWMRLEDNLINYQTVIKLES 502
           G++   W +    +  Y PW   W+ L  N ++     K ES
Sbjct: 23  GIIRSGWVMLKEDKMKYLPWTKKWLVLSSNSLSIYKGSKSES 64


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 453 DWRTTLSITKQSSSWNLLHIICSLPL 530
           D R  +S  +   SWNL + I +LPL
Sbjct: 330 DTRDLISYIESPISWNLKYFISALPL 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,684
Number of Sequences: 5004
Number of extensions: 64155
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)