Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20g06
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 61 1e-10
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 29 0.67
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 27 1.5
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 1.5
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.7
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 6.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 6.2
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 25 8.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 8.3
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/116 (23%), Positives = 64/116 (55%)
Frame = +1
Query: 160 LDEIVSSEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNS 339
+D I+S ++ + + + + Q ++ + +F AW LVRS +++G+ L ++
Sbjct: 15 IDSIISVDEFLQIKEQYDAE--QPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKD 72
Query: 340 HPEGKRDYLFYLAIGNARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEKE 507
PE + + L+Y+A+ + ++K+Y ++ Y+ L +P + + L L+ ++ + KE
Sbjct: 73 SPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLYDAVTKE 128
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 86 IFLFVNVKYLIKVIIYSN-RLQWKTY*TRLFHRKICKNSR 202
++L VNV+ IK I+Y N L W + + + K+C+ R
Sbjct: 14 LYLMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGR 53
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 334 NSHPEGKRDYLF--YLAIGNARIKEYNKALHYVKSFLEIEPANQ 459
NS+P ++ F Y+ + R +EYNKA+ + +L + P NQ
Sbjct: 113 NSYPNRNAEHFFPAYIMLLIQR-QEYNKAMKLLDEYLLLPPYNQ 155
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 191 KNSRGSFMNNCIKGTFPTKPSLNTHGV*CAASIQR-IYERESYFLKNCSTLILKAN 355
K R +++NN + KP LN++G IQ I E LKN + AN
Sbjct: 516 KGGRENYLNNRVSSYRLVKPILNSYGNHVLNRIQHDILENHFCCLKNVKDFVCGAN 571
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 175 SSEDLQKFERVFHEQLHQGNVSHKAQFE 258
+ +++ E++ HEQL++ N K +FE
Sbjct: 162 NQREVESLEQLVHEQLNKLNTESKMEFE 189
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 110 YLIKVIIYSNRLQWKTY*TRLFHRKICKNSRGSFMNNCIKGTFPTKPSL 256
YL K I + +R+ T + HR I RGSF N F T P L
Sbjct: 2 YLTKQIPHYSRIHTTQLLTVVNHRTIPFKIRGSFSNCRRYSNFATVPLL 50
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 151 EDVLDEIVSSEDLQKFERVFHEQLHQGNV 237
E++ D +VS E+L+K RVF + +GNV
Sbjct: 217 EEIRDLLVS-EELRKPARVFEDTSRRGNV 244
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 214 EQLHQGNVSHKAQFEYAWCLVRSKYPTDI 300
+ H G ++ K Q E+AW +V Y + +
Sbjct: 144 QAFHDGIINQK-QLEFAWSIVNDSYASSL 171
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 309 SLSYIRWILAAH*TPCVFKLGFVGNVPLMQLFMKDPLEFLQ 187
SL + R +L+A VF FV + + L ++DP+ FLQ
Sbjct: 587 SLPWGRTLLSAALWITVFIAKFVESYYFLTLSVRDPIRFLQ 627
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,420
Number of Sequences: 5004
Number of extensions: 52051
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -