Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20g06
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.56 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.56 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.8  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 90  KIGVPCKVYYEKLVDLQCRINGIMDCL 10
           K G PC  Y +  V+ + +I G  DCL
Sbjct: 80  KFGFPCLQYTQLPVNPRDKIEGAEDCL 106


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 90  KIGVPCKVYYEKLVDLQCRINGIMDCL 10
           K G PC  Y +  V+ + +I G  DCL
Sbjct: 80  KFGFPCLQYTQLPVNPRDKIEGAEDCL 106


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 299 ISVGYLLRTKHHAYSNWALWETFP 228
           +++G+L   KH+     ALW   P
Sbjct: 82  LNLGFLAWAKHNPRGKDALWSLVP 105


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 358 DYLFYLAIGNARIKEYNKALHYVKSFLEIE 447
           +Y  Y    N     YNK L+Y    + IE
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIE 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,773
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)