Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20g02
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0619 - 8125611-8127967,8128449-8130123                           31   0.46 
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996...    27   7.5  
10_01_0015 - 187905-188432                                             27   10.0 
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    27   10.0 

>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 20/61 (32%), Positives = 36/61 (59%)
 Frame = +2

Query: 2   VLLISLSKLNILGEIP*SIGIRNMLVSKLVGLRAATTSMMVSRNLAAAQKATDPIQQLFL 181
           +LL+ L   N++G+IP ++G    LVS  +GL++ T S ++ + L   Q+    +  L+L
Sbjct: 328 LLLLDLGYNNLIGQIPSALGNITNLVS--LGLQSCTLSGLIPQELGQLQQ----LNALYL 381

Query: 182 D 184
           D
Sbjct: 382 D 382


>04_04_0529 -
           25997736-25998055,25998441-25998804,25999563-25999675,
           25999880-25999989,26000155-26000311,26000390-26000915,
           26001101-26001265,26002470-26002589,26003022-26003093,
           26003422-26003499,26003965-26004057,26004491-26004647,
           26005351-26005589,26006907-26007050,26007637-26007666,
           26010610-26010993,26011486-26011554,26012353-26012418,
           26013166-26013255,26013583-26013628,26014318-26014419,
           26014552-26014694
          Length = 1195

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 1   GFVNFTVKTEYSWRNSL---IDRN*KYARIKTGWFEGGDHF 114
           G V FTV+  + WRNS+   ID        K+  F+G DH+
Sbjct: 512 GLVVFTVQHRHRWRNSVRFAIDLEAMGISGKSTLFQGTDHW 552


>10_01_0015 - 187905-188432
          Length = 175

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 93 PTSFDTSIFLIPIDQGISPRIF-SFDSEIN 7
          PTS    +FL P   G SP IF + D+E N
Sbjct: 3  PTSLSLFLFLFPSLSGFSPHIFQTVDTEGN 32


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 89   VGLRAATTSMMVSRNLAAAQKATDPIQQLFLDKIREYKQ--KSAGGKVP-DASPA 244
            VG + ATTS + S NL   QKA   +       + E  +  K    KVP D S A
Sbjct: 1334 VGFQTATTSNLYSSNLCQNQKANSEVLHGVSSNLIENSKDDKKTSPKVPVDGSKA 1388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,475
Number of Sequences: 37544
Number of extensions: 267482
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)