Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f24
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    31   0.15 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   3.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   7.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   7.5  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +1

Query: 415 IGGSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNS 594
           + G +  +P EP  +   S+   S        HND  ++ N I  L P R+    +SS +
Sbjct: 173 VSGDYSDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRA 232

Query: 595 PILSTEENQ 621
              S   +Q
Sbjct: 233 DRSSVRRSQ 241


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +2

Query: 473 CLSTPQQPCSAIHTM------TE*NLPTL*LTWHLIDVGLNQHQATVLFLVLKKINKNPK 634
           C++ P++    IH++      TE   PTL +   L+  GLN+    +       I+   K
Sbjct: 221 CIAHPEEVPETIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSK 280

Query: 635 MIXEPKTV 658
           ++ +P+ V
Sbjct: 281 LVEDPQVV 288


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 295 RIPIKKCHTFLFVFINNYQNYA*SNYFQLIQF 200
           +IPI KCH  +  + ++ Q+Y       L++F
Sbjct: 660 KIPIFKCHVAIVQYFHDLQDYLPIVALNLVEF 691


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 575 NQHQATVLFLVLKKINKNPKMIXEPKTVETGI 670
           N H  ++L +  KKIN N K    P +++  I
Sbjct: 320 NYHNPSILLIKAKKINANHKSSSRPISLDATI 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,822
Number of Sequences: 5004
Number of extensions: 47277
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)