Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20f24
(670 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-1934|AAN11884.1| 1233|Drosophila melanogaster CG18490-P... 29 4.3
AE014296-1933|AAF50076.2| 1233|Drosophila melanogaster CG18490-P... 29 4.3
BT010256-1|AAQ23574.1| 1233|Drosophila melanogaster RE33713p pro... 29 5.7
AY071225-1|AAL48847.1| 1203|Drosophila melanogaster RE26660p pro... 29 7.6
AE014296-982|AAF50759.1| 1203|Drosophila melanogaster CG5249-PA ... 29 7.6
DQ486143-1|ABF50839.1| 1317|Drosophila melanogaster RhoGAP18B-PC... 28 10.0
DQ486142-1|ABF50838.1| 752|Drosophila melanogaster RhoGAP18B-PD... 28 10.0
AE014298-2804|AAF48921.1| 1063|Drosophila melanogaster CG7502-PA... 28 10.0
>AE014296-1934|AAN11884.1| 1233|Drosophila melanogaster CG18490-PC,
isoform C protein.
Length = 1233
Score = 29.5 bits (63), Expect = 4.3
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 421 GSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPI 600
G PP+P E A + +H T NS N KSA A + + +T++ + +
Sbjct: 142 GKPPPSPAEKAAAQSRANQQHGTPPGNSNSSNSNHKSA---AAVEEENSSESNTTTKASL 198
Query: 601 LSTEENQQKPQNDT 642
T ++ +ND+
Sbjct: 199 AFTIDHFDASENDS 212
>AE014296-1933|AAF50076.2| 1233|Drosophila melanogaster CG18490-PB,
isoform B protein.
Length = 1233
Score = 29.5 bits (63), Expect = 4.3
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 421 GSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPI 600
G PP+P E A + +H T NS N KSA A + + +T++ + +
Sbjct: 142 GKPPPSPAEKAAAQSRANQQHGTPPGNSNSSNSNHKSA---AAVEEENSSESNTTTKASL 198
Query: 601 LSTEENQQKPQNDT 642
T ++ +ND+
Sbjct: 199 AFTIDHFDASENDS 212
>BT010256-1|AAQ23574.1| 1233|Drosophila melanogaster RE33713p
protein.
Length = 1233
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 421 GSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPI 600
G PP+P E A + +H T NS N KSA A + + +T++ + +
Sbjct: 142 GKPPPSPAEKAAAQSRANQQHGTPPGNSNSSNSNHKSA---AAVEEENSSESNTTTKASL 198
Query: 601 LSTEENQQKPQNDT 642
T ++ +ND+
Sbjct: 199 AFTIDHFDVSENDS 212
>AY071225-1|AAL48847.1| 1203|Drosophila melanogaster RE26660p
protein.
Length = 1203
Score = 28.7 bits (61), Expect = 7.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 415 IGGSWPPAPREPECADYGSMSKH-STATMQRNSHNDRVK-SANLIAHLAPDRRRIKST-- 582
+ G+ PP P C S H ST T N+H+ ++ + + DR + S+
Sbjct: 330 VSGATPPPPTATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGRHASVIIGQDRSPMASSDK 389
Query: 583 -SSNSPILSTEENQQKPQN 636
++ SP LS ++Q PQ+
Sbjct: 390 DTAGSP-LSGLDHQMTPQD 407
>AE014296-982|AAF50759.1| 1203|Drosophila melanogaster CG5249-PA
protein.
Length = 1203
Score = 28.7 bits (61), Expect = 7.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 415 IGGSWPPAPREPECADYGSMSKH-STATMQRNSHNDRVK-SANLIAHLAPDRRRIKST-- 582
+ G+ PP P C S H ST T N+H+ ++ + + DR + S+
Sbjct: 330 VSGATPPPPTATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGRHASVIIGQDRSPMASSDK 389
Query: 583 -SSNSPILSTEENQQKPQN 636
++ SP LS ++Q PQ+
Sbjct: 390 DTAGSP-LSGLDHQMTPQD 407
>DQ486143-1|ABF50839.1| 1317|Drosophila melanogaster RhoGAP18B-PC
protein.
Length = 1317
Score = 28.3 bits (60), Expect = 10.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 475 SKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSN--SPILSTEENQQKPQNDTRT 648
S ++T N++ND + + N H + I + +N + + E QQ+ Q T
Sbjct: 582 SNNNTINCSSNNNNDNISNNNNNHHTVDNESGINNNKNNDGNANCNVNEQQQQQQQQPIT 641
Query: 649 *NC 657
NC
Sbjct: 642 QNC 644
>DQ486142-1|ABF50838.1| 752|Drosophila melanogaster RhoGAP18B-PD
protein.
Length = 752
Score = 28.3 bits (60), Expect = 10.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 475 SKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSN--SPILSTEENQQKPQNDTRT 648
S ++T N++ND + + N H + I + +N + + E QQ+ Q T
Sbjct: 17 SNNNTINCSSNNNNDNISNNNNNHHTVDNESGINNNKNNDGNANCNVNEQQQQQQQQPIT 76
Query: 649 *NC 657
NC
Sbjct: 77 QNC 79
>AE014298-2804|AAF48921.1| 1063|Drosophila melanogaster CG7502-PA
protein.
Length = 1063
Score = 28.3 bits (60), Expect = 10.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 475 SKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSN--SPILSTEENQQKPQNDTRT 648
S ++T N++ND + + N H + I + +N + + E QQ+ Q T
Sbjct: 582 SNNNTINCSSNNNNDNISNNNNNHHTVDNESGINNNKNNDGNANCNVNEQQQQQQQQPIT 641
Query: 649 *NC 657
NC
Sbjct: 642 QNC 644
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,488,654
Number of Sequences: 53049
Number of extensions: 471483
Number of successful extensions: 1152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -