Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f24
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like ...    31   0.98 
Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   5.2  
U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    28   6.9  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like
           protein family protein7 protein.
          Length = 318

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 484 STATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEEN-QQKPQNDTRT*NC 657
           S   ++R  HNDR+   N++  + P   R K  S N+ + S+ E   +K + D +   C
Sbjct: 188 SIEQVRREEHNDRIGHKNVLEIIIPPPLRSKYMSRNTIVESSREKVPEKEEIDEKRLTC 246


>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 451 ECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQ 624
           +C+D+ S+ KH    M R+S  D  KS  L A      R I S +     L++E + +
Sbjct: 87  DCSDHSSLCKHCCYEMIRDSIKD-YKSGPLYARCPQCFRNISSLTRRKRRLTSEGHDE 143


>U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.7 protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 141 LF*CMYIFISDNKLISLIKYLLIANIDYYLNKLFQILFAT 22
           LF  + I I  N  I+    L++ N DYY+N +  I+  T
Sbjct: 85  LFAFLLITIFKNIFINSSILLIVTNTDYYINTVHNIIMGT 124


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 439  PREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRR 570
            P E +  D  S+SKH       N+ N  V  A L  H   DR R
Sbjct: 2148 PEENDDVDLSSVSKHCALVRSNNTFNFSVNRA-LHIHFVTDRSR 2190


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 439  PREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRR 570
            P E +  D  S+SKH       N+ N  V  A L  H   DR R
Sbjct: 2148 PEENDDVDLSSVSKHCALVRSNNTFNFSVNRA-LHIHFVTDRSR 2190


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
 Frame = +1

Query: 415 IGGSWPPAP---REPEC----ADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRI 573
           +GG  PP+P   R P      +    +S+HS A+ + +  N  + S   ++H+A +  R 
Sbjct: 52  VGGPAPPSPVLRRAPSGPISPSPISPVSQHSRASSRHDIDNTSLLSILKLSHVARESSR- 110

Query: 574 KSTSSNSPILSTEENQQKPQNDT 642
            ++ +NSP  +  E + K +  T
Sbjct: 111 NTSRNNSPQPAGRETELKRKIQT 133


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 280 KCHTFLFVFINNYQNYA*SNYFQLIQFGVIAS 185
           +CH F+ +F+  +Q Y  S + +++  GVIA+
Sbjct: 331 QCHFFVNLFMTLFQIYLPSYFKEVLHLGVIAN 362


>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 508 SHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQKPQND 639
           S ND +K AN  A+L   R++++S ++       +  + KP+ +
Sbjct: 234 SKNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAYKMKPKKE 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,852
Number of Sequences: 27780
Number of extensions: 258099
Number of successful extensions: 534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)