Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f24
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 522 SVIV*IALHGCCGVLRH*SIISTLRFS 442
           S+I  I+  GCCG +R  S   T+ F+
Sbjct: 60  SIIFVISFFGCCGAIRE-SHCMTITFA 85


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 129 MYIFISDNKLISLIKYLLIANI 64
           MY+ + DNKL S   Y +I  +
Sbjct: 90  MYLAVKDNKLASNAGYNVIEQV 111


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 129 MYIFISDNKLISLIKYLLIANI 64
           MY+ + DNKL S   Y +I  +
Sbjct: 90  MYLAVKDNKLASNAGYNVIEQV 111


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 129 MYIFISDNKLISLIKYLLIANI 64
           MY+ + DNKL S   Y +I  +
Sbjct: 90  MYLAVKDNKLASNAGYNVIEQV 111


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -2

Query: 330 YCFRHSLYSFELESQLKSVTHFCLFS*IITRTMHRAIIF 214
           Y    S   F   + L  V   C F+  +T   HR  +F
Sbjct: 142 YAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLCVF 180


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 459 STLRFSRSRWPASS 418
           +T  +S +RWPA+S
Sbjct: 772 ATSNYSTTRWPATS 785


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,072
Number of Sequences: 438
Number of extensions: 3553
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)