Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f20
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    68   1e-12
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   3.1  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.1  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   9.4  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   9.4  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/68 (42%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = +3

Query: 9    LKQRRDKGLEKDIAIARLEQISPFPYDQVKAEIAKYPNA-QLVWSQEEHKNMGSWSYIEP 185
            L + R++    +IAI R+EQ+ PF + Q+ A I++YPN  +++W QEE  N G+W+Y+EP
Sbjct: 903  LSKAREENKIDNIAITRVEQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNAGAWTYMEP 962

Query: 186  RFRTLLQN 209
            R  T+L++
Sbjct: 963  RIYTILKH 970


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/85 (22%), Positives = 42/85 (49%)
 Frame = +3

Query: 99  AEIAKYPNAQLVWSQEEHKNMGSWSYIEPRFRTLLQNQKQIRAKSQSKGGSWLSQLFGRD 278
           AE + +P +  +   EE K +  +   +P++R +L+N K+++     + G  L +L  ++
Sbjct: 165 AEESSHPESVSIL--EEKKKIPLYPNGQPKYRKILENGKKVK-YLLDENGEILKRLVKKE 221

Query: 279 ESPQTNAQETETVPRTISYNGRATA 353
           +  + + +  E   RT   N  A +
Sbjct: 222 KKLKNDNERLENEHRTEKLNVNANS 246


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 285 PQTNAQETETVPRTISYNGRATAASPAT 368
           P T+   T TVP T S N   T A P T
Sbjct: 86  PTTSMNTTTTVPPTTSLNTTTTTAPPTT 113


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +3

Query: 81  PYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPRFRTLLQNQKQIRAKSQSK 242
           PY Q   +IA+  N    +S + HK++ ++S     FR++LQ + Q+  +++ K
Sbjct: 78  PYAQA-FDIAEIVNLIREYSHKYHKHIPAFSAYIVAFRSVLQPEVQVSPEARHK 130


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 279 ESPQTNAQETETVPRTISYNGRATAASPATGSKAAHNKELRN 404
           E    N  ++  VP T+       A +P+T S+   NKEL N
Sbjct: 497 ELDHLNETKSRNVPATVQVALDEYAQNPSTASETLVNKELAN 538


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 273 RDESPQTNAQETETVPRTISYNGRATAASPA 365
           R  +PQTN+Q+++  PR +S N R T  + A
Sbjct: 98  RRHTPQTNSQKSQKTPR-LSSNKRRTLKNDA 127


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 140 APHELSVRVLRDLGLHLVVRERRDLLESSNSNVLF 36
           APH  S+ ++ D  LHL V+E    + +  + ++F
Sbjct: 440 APHRRSILIVGDGSLHLTVQEISATIRNGLTPIIF 474


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 536 ACRYLRDQIEIVNNSSVIVEHICHKHLNKSVII 634
           A RY R    +V++S V    IC+ HL++ +II
Sbjct: 389 AKRYYRQHCALVDSSFVKDISICNIHLSRIMII 421


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 309 ETVPRTISYNGRATAASPATGSKAAHNKE 395
           E VPRTIS N         +   AAH+KE
Sbjct: 446 EVVPRTISENAGLDPTDVISKLYAAHHKE 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,954
Number of Sequences: 5004
Number of extensions: 41661
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)