Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20f20
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 80 2e-17
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 79 3e-15
08_01_1003 + 10174556-10174951 31 0.60
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 31 0.60
07_03_1491 + 26953193-26954326 29 4.2
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 28 5.6
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 28 7.4
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 7.4
01_06_0495 - 29779499-29781325 28 7.4
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 27 9.7
02_05_0641 - 30573123-30573370,30573472-30573721,30574098-305741... 27 9.7
01_06_1557 - 38231826-38233391 27 9.7
>04_03_0741 + 19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 80.2 bits (189), Expect(2) = 2e-17
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = +3
Query: 9 LKQRRDKGLEKDIAIARLEQISPFPYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPR 188
L + R K D+AI R+EQ+ PFPYD ++ E+ +YPNA++VW QEE NMG++SYI PR
Sbjct: 927 LDEERRKKERDDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPR 986
Query: 189 FRTLLQ 206
T ++
Sbjct: 987 LLTAMR 992
Score = 26.2 bits (55), Expect(2) = 2e-17
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 327 ISYNGRATAASPATGSKAAHNKELRNLLEE 416
I Y GRA +A+ ATG + H +E L+++
Sbjct: 1002 IKYVGRAPSAATATGFYSVHVQEQTELVQK 1031
>07_03_1795 + 29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 79.0 bits (186), Expect = 3e-15
Identities = 32/60 (53%), Positives = 44/60 (73%)
Frame = +3
Query: 9 LKQRRDKGLEKDIAIARLEQISPFPYDQVKAEIAKYPNAQLVWSQEEHKNMGSWSYIEPR 188
L + R K D+AI R+EQ+ PFPYD ++ E+ +YPNA++VW QEE NMG++SYI PR
Sbjct: 894 LDEERKKTERSDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYISPR 953
>08_01_1003 + 10174556-10174951
Length = 131
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 374 RAGRWRGGCGATVIANGAR 318
R GRWRGGC +ANG R
Sbjct: 6 RPGRWRGGCERRSMANGGR 24
>07_01_1021 +
8736032-8736106,8736336-8736374,8737362-8737493,
8737848-8737892,8738450-8739157,8740679-8740807,
8741290-8741346,8742937-8742954
Length = 400
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 401 PQFLVVGGLRAGRWRGGCGATVIANG 324
P+ L+V G R G RGGCGA + A G
Sbjct: 255 PRRLLVEGRRGGEARGGCGAAMEARG 280
>07_03_1491 + 26953193-26954326
Length = 377
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 478 RRTR**LAVQLRRKLYLLGSLPLF 549
RR +AVQ RR++Y LGSLP F
Sbjct: 275 RRVEEWMAVQKRRRIYHLGSLPPF 298
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 401 PQFLVVGGLRAGRWRGGCGATVIANGA 321
P++ V G L GRWR GC A +GA
Sbjct: 7 PRWTVDGNLVRGRWRYGCRADSDLDGA 33
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 133 CGARRSTRTWARGATSSRASAPSCRTRSRLGQSPNRRGVA 252
CG+ + + TSS SAP+ T +R S + RGVA
Sbjct: 15 CGSYSPSADVSESETSSDCSAPTTTTTTRRFASSSSRGVA 54
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 74 SVPVRPGEGRDREVPERSA 130
++P+R GEGRD EVP +A
Sbjct: 910 TIPMRSGEGRDCEVPGSTA 928
>01_06_0495 - 29779499-29781325
Length = 608
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = -1
Query: 194 AEARLDVAPRAHVLVLLLAPHELSVRVL-----RDLGLHLVVRERRDLLESSN 51
A A +++A A +L+L P S+ VL D GL VRE RDL+ S N
Sbjct: 498 AHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKN 550
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 255 LSQLFGRDESPQTNAQETETVPRTISYNGRATAASPA--TGSKAAHNKE 395
LS FG+ + + +E+ V RT++++G ++SP+ +GS+ +++
Sbjct: 204 LSVSFGQRAPHRASTRESSPVRRTVTHDGHRKSSSPSRRSGSREVPDRD 252
>02_05_0641 -
30573123-30573370,30573472-30573721,30574098-30574187,
30574277-30574404,30574493-30574745
Length = 322
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 433 AYNTQNSSRRFLSSLLWAAFEPVAGEAAVARPL 335
AY+T +++ R ++ LLW A A PL
Sbjct: 278 AYHTSDAANRVIADLLWDAMPSAGSGGAATTPL 310
>01_06_1557 - 38231826-38233391
Length = 521
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 120 NAQLVWSQEEHKNMGSWSY 176
N Q++W Q E + M +WSY
Sbjct: 499 NEQMMWQQFETQQMAAWSY 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,115,170
Number of Sequences: 37544
Number of extensions: 300787
Number of successful extensions: 1004
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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