Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20f18
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 33 0.029
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 29 0.81
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 4.3
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 7.6
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 10.0
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 25 10.0
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 10.0
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 10.0
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 386 ELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSL 508
EL +K++ A+DL FA HA R I +DV LL++R + +
Sbjct: 416 ELFFKQI---ANDLSAFADHAHRKTIDTQDVVLLMKRQRKI 453
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.7 bits (61), Expect = 0.81
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 413 YASDLEVFARHAR-RCKIQGEDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDA 589
YAS + + R + + + Q +D++ L+ +++ S++ + A L+ + S+ E F D
Sbjct: 336 YASLYKEYTRKEQEKLRKQNDDLQNLLSKHRI--SRIPMSTVNAFLRAEDSIPES-FSDE 392
Query: 590 SSNFDEPAMKDKMRKEE 640
+ ++E KD++ EE
Sbjct: 393 QAYYEEKRRKDQLEAEE 409
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 497 NKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEE-PPM 649
NK ES SP +AL+ S A ++ SS DE K++ K++ PPM
Sbjct: 180 NKIKSEASESASP-SALQALDSTAAGSSKEHSSPHDETVKKEENDKDQYPPM 230
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 248 YFEMSAFEDLSASQRLRAALKRD 316
YFE AFEDL ++R +KRD
Sbjct: 1119 YFEFDAFEDLVNTKRPVIYMKRD 1141
>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 256
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 338 STVGLEITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQ 517
STV +TK + +LE YK ++ DL K+ E + + + KS
Sbjct: 147 STVTEAMTKMKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKS---- 202
Query: 518 LESRSPTAALKRKSS 562
L+S S +++ RKSS
Sbjct: 203 LDSISHSSSSSRKSS 217
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +2
Query: 500 KSLRSQLESRSP-----TAALKRKSSL--AEDIFEDASSNFDEPAMKDKMRKEEPPME 652
+SL+S++ES SP + A K K L A D SN+D D++ +E P++
Sbjct: 17 ESLQSEIESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDEVDEEVVPVK 74
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 471 KMSSYW*DETNLYDLNLNRGPQQRLSSASHRSPKI 575
K+++YW D+ N NLN P ++ S P+I
Sbjct: 220 KLAAYWEDDFNKDMANLNVLPPTAVTRVSEYVPEI 254
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 332 LESTVGLEITKPAMDLILELIYKKLSVYASDLE 430
+ S V +E+ KP + L L+ KKL V S +E
Sbjct: 356 IRSQVLIELVKPYTSVKLSLLAKKLGVSISIIE 388
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 536 TAALKRKSSLAEDIFEDASSNFDEPAMKDK 625
T KRK L ++ E S NFD+ M DK
Sbjct: 129 TGIKKRKIVLPSNVVELDSLNFDKVVMDDK 158
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 476 VKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSN 598
++L+ +NK+ R SR PT + KSSL++ + +S+N
Sbjct: 599 MQLVSSQNKNPRKTAISRKPTLSSMFKSSLSQLMTTVSSTN 639
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,267
Number of Sequences: 5004
Number of extensions: 47181
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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