Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f18
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051853-1|AAK93277.1|  611|Drosophila melanogaster LD35238p pro...    36   0.038
AE013599-1718|AAF58374.1|  611|Drosophila melanogaster CG4840-PA...    36   0.038
U06458-1|AAC47347.1|  278|Drosophila melanogaster transcription ...    31   1.9  
L29540-1|AAA28488.1|  278|Drosophila melanogaster TAFII40 protein.     31   1.9  
AY061338-1|AAL28886.2|  274|Drosophila melanogaster LD26511p pro...    31   1.9  
AE014298-2613|AAF48767.3|  278|Drosophila melanogaster CG6474-PA...    31   1.9  
AE014296-1685|AAF50248.2|  407|Drosophila melanogaster CG12526-P...    29   7.7  
AE014134-2504|AAF53402.3| 1553|Drosophila melanogaster CG3479-PA...    29   7.7  

>AY051853-1|AAK93277.1|  611|Drosophila melanogaster LD35238p
           protein.
          Length = 611

 Score = 36.3 bits (80), Expect = 0.038
 Identities = 34/126 (26%), Positives = 61/126 (48%)
 Frame = +2

Query: 296 RAALKRDVTAICLESTVGLEITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGED 475
           R ALK    AI     V  E+ K A D I +    K+ +   +++  +   + C+ + E 
Sbjct: 287 RKALKSRDDAIESRKQVSFELEK-AKDEIKQRD-DKVKLLEEEIDELSVALKECREENEQ 344

Query: 476 VKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMED 655
            ++L  RNKS   + E +     LK + + A+D F + SSN ++ A   K+R +    ++
Sbjct: 345 -QVLFERNKSQNLETEVKD----LKTRLTAADDRFSEYSSNAEQVA--QKLRVQVTEKQE 397

Query: 656 AIDMTV 673
            +D T+
Sbjct: 398 QLDETI 403


>AE013599-1718|AAF58374.1|  611|Drosophila melanogaster CG4840-PA
           protein.
          Length = 611

 Score = 36.3 bits (80), Expect = 0.038
 Identities = 34/126 (26%), Positives = 61/126 (48%)
 Frame = +2

Query: 296 RAALKRDVTAICLESTVGLEITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGED 475
           R ALK    AI     V  E+ K A D I +    K+ +   +++  +   + C+ + E 
Sbjct: 287 RKALKSRDDAIESRKQVSFELEK-AKDEIKQRD-DKVKLLEEEIDELSVALKECREENEQ 344

Query: 476 VKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMED 655
            ++L  RNKS   + E +     LK + + A+D F + SSN ++ A   K+R +    ++
Sbjct: 345 -QVLFERNKSQNLETEVKD----LKTRLTAADDRFSEYSSNAEQVA--QKLRVQVTEKQE 397

Query: 656 AIDMTV 673
            +D T+
Sbjct: 398 QLDETI 403


>U06458-1|AAC47347.1|  278|Drosophila melanogaster transcription
           initiation factorTFIID 42 kDa subunit protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 380 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 523
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 45  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 94


>L29540-1|AAA28488.1|  278|Drosophila melanogaster TAFII40 protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 380 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 523
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 45  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 94


>AY061338-1|AAL28886.2|  274|Drosophila melanogaster LD26511p
           protein.
          Length = 274

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 380 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 523
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 41  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 90


>AE014298-2613|AAF48767.3|  278|Drosophila melanogaster CG6474-PA
           protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 380 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 523
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 45  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 94


>AE014296-1685|AAF50248.2|  407|Drosophila melanogaster CG12526-PA
           protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 311 RDVTAICLESTVGLEITKPAMDLILELIYK 400
           R    +CL++TV L+++ P M + L + YK
Sbjct: 368 RSQKPVCLKATVVLDLSMPTMSIFLGMSYK 397


>AE014134-2504|AAF53402.3| 1553|Drosophila melanogaster CG3479-PA,
            isoform A protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 470  EDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPA 613
            + ++ L  RNK  R+ L S  P+  +     L  D  EDA     EPA
Sbjct: 1327 QQMQQLELRNKQFRAHLASDDPSNDVHFVQGLTSDAREDADCEDSEPA 1374


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,152,770
Number of Sequences: 53049
Number of extensions: 505040
Number of successful extensions: 1332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)