Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f18
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    32   0.43 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   4.0  
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    28   5.3  
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
 Frame = +2

Query: 254 EMSAFEDLSASQRLRAALKRDVTAICLEST-VGLEITKPAMDLILELIYKKLSVYASDLE 430
           E+++  ++ A+Q L +  + DV    +E+  + +E       L +EL   K+    S +E
Sbjct: 586 ELTSSLEMVAAQLLSSQQETDVAVTKVENLELKMEEAHRMYLLDIELSRVKIDELQSSIE 645

Query: 431 VFA---RHARRCKIQGEDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNF 601
           V +   R  +   +Q E++KL +R  + L++ L      A  K K+   E   ED+S  F
Sbjct: 646 VLSKLEREVQSSNLQNEELKLSLRNFEELQADL------AMSKAKNEELEQQIEDSSREF 699


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 470 EDVKLLVRRNKSLRSQLESRS-PTAALKRKSSLAEDIFEDASSNFDE-PAMKDKMRKEEP 643
           +++KL+V  N+ LRSQL+ +      +K   +  +D   DA S   E P   D     + 
Sbjct: 235 KEIKLIVNENRQLRSQLKQKDIEIIGIKSCVNFLQDPQRDAKSIKKELPVQVDPSTPRDN 294

Query: 644 PMEDAIDMT 670
            + D  D++
Sbjct: 295 ELMDCSDLS 303


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = -1

Query: 332 NRWLLRPALTLHVAFAKQINLQKQTFRNKNNELHRIHVHTL*IPT*FFKSAKLIILSLPN 153
           N+W       LH  F+  +N  ++ FRN  N L R + H L       ++++++ + LP 
Sbjct: 606 NKWKSDRLYLLHSIFSILLNQTRRGFRNYVNRLLRNNYHRL-------ETSEIVDIDLPI 658

Query: 152 FNKLLRPSIHSG 117
           F+ L   +   G
Sbjct: 659 FHSLFASTQFDG 670


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 548 KRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMEDAID 664
           +RK     D+ E  +S+ +E A+KD ++K  P  ED  D
Sbjct: 11  RRKRDQFRDMEEGEASDDEEIAVKDDLKKRTPRGEDEAD 49


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 350 IRQLIPNRWLLRPALTLHVAFAKQINLQKQTFRNKNN 240
           IR ++P R  LR    LH+   +QI +++Q  R  NN
Sbjct: 302 IRMMLPKR--LRIRFGLHIGIDEQIAMERQDDRTNNN 336


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 353 EITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLES 526
           ++ +  + +  E +  K  V +SDL ++   +    +   D+KL V  N + R  LES
Sbjct: 334 QVVETILQIKTECLQSKWFVTSSDLGIYGMLSAMATMSRADLKLQVSGNGTFRKLLES 391


>Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical
           protein W07G1.1 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 468 GKMSSYW*DETNLYDLNLNRGPQQRLSSASHRSPKIYSKTHPPTLTSPQ*KTKCARKSR 644
           G    Y    T + D+N  +  Q  ++S+SH +P  Y   H P     + K K  ++S+
Sbjct: 74  GAKKLYTTSGTLVKDINKIKDGQNYVASSSHFTPAAYGGQHQPIQKEVKLKKKKKKRSQ 132


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 510 DLNLNRGPQQRLSSASHRSPKIYSKTHPPTLTSP 611
           D  + + P+   SS  HRSP+  SK+ PP+ ++P
Sbjct: 59  DKVIKKQPETSSSSPEHRSPR-RSKSAPPSSSNP 91


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 269 EDLSASQRLRAALKRDVTAICLESTVGLEITKP 367
           EDL+  + LR   +R +  +  + T  LEITKP
Sbjct: 19  EDLAREKELRKEAERQLKVLLDKQTGSLEITKP 51


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +2

Query: 263 AFEDLSASQRLRAALKRDVTAICLESTVGLEITKPAMDL--ILELIYKKLSVYASDLEVF 436
           +FE++ +S +L  ++K    ++ LE        +  ++L  +  +IY+ L+ ++  L+  
Sbjct: 170 SFENVLSSLKLLDSIKN--MSLFLEPVYQESAFRKELNLSTLTSVIYQALNQFSEQLQTI 227

Query: 437 ARHARRCKIQGEDVKLLVRRNKSLRSQ 517
            ++    K    D+K + R   SL S+
Sbjct: 228 RKYVSNTKASESDLKYIQRLINSLNSK 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,450
Number of Sequences: 27780
Number of extensions: 268534
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)