Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f13
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...   133   1e-31
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    83   2e-16
AF016676-2|AAG24106.1|  500|Caenorhabditis elegans Cytochrome p4...    29   4.6  
U41746-3|AAO25990.1|  429|Caenorhabditis elegans Aspartyl protea...    28   8.0  
U41746-2|AAO25989.1|  635|Caenorhabditis elegans Aspartyl protea...    28   8.0  
AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    28   8.0  

>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score =  133 bits (322), Expect = 1e-31
 Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 15/190 (7%)
 Frame = +3

Query: 216 SLEALFLAKRGHRVRLYEYREDIRNTPQARGRSINLALSIRGRTALREVGLEDHMINNHG 395
           +L A F A++G  V +YE+R+DIR     +GRSINLALS RG++AL  VGL+++++ N G
Sbjct: 14  ALNACFFAQKGWDVSVYEFRKDIRTMKHVQGRSINLALSQRGKSALEAVGLKEYIV-NQG 72

Query: 396 IPMKGRNIHRIDGSTYIIPYDSRTKQCIYSVGRNYLNGLLLQESEKYENVERFFNHKLIA 575
           +P+  R IH  DG TY      +  + I S+ R +LN +++ ++EK  NV+ FF HK+  
Sbjct: 73  VPLYARLIHNKDGKTYSRQPYGKPGEHIVSINRRHLNEVMITQAEKSPNVKFFFEHKVKN 132

Query: 576 SNLRKGFLSFQ-------------KTDTKEIVE--VNADLIIGADGAFSAVRKEIMKQPL 710
            +  K  L  Q             K+  +E  E  V ADLI+  DGA+SAVR+ +M  P 
Sbjct: 133 VDYDKKQLVVQCTSQPSKIPTFGNKSPPQEHAEFHVEADLILACDGAYSAVRRSLMTIPR 192

Query: 711 FDYXQXYIEH 740
           FD+ Q YIEH
Sbjct: 193 FDFSQEYIEH 202


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
 Frame = +3

Query: 306 GRSINLALSIRGRTALREVGLEDHMINNHGIPMKGRNIHRID--GSTYIIPYDSRTKQCI 479
           G+SINLAL +R  + ++ +GL++ +I + G+P++ +  H  D  G    +P        I
Sbjct: 4   GKSINLALGVRAMSTMKRIGLKEKVI-HIGVPIRDQIAHFGDTKGKLKRLPV-LNDDDFI 61

Query: 480 YSVGRNYLNGLLLQESEKYENVERFFNHKLIASNLRKGFLSFQKTDTKEIVEVNADLIIG 659
            ++ R  L+ +L+ E+EKY NV+  FN K    +L+   L  Q +D   +  V+ DL + 
Sbjct: 62  LTINRQELSQILINEAEKYNNVKFHFNCKATKFDLKSESLIVQNSD--NLSTVDGDLFLA 119

Query: 660 ADGAFSAVRKEIMKQPLFDYXQXYIE 737
            DGA S++R+ ++K P F++ Q Y E
Sbjct: 120 CDGAHSSIRRSLLKAPGFNFSQKYSE 145


>AF016676-2|AAG24106.1|  500|Caenorhabditis elegans Cytochrome p450
           family protein 33C3 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 480 YSVGRNYLNGLLLQESEKYENVERFFNHKLIASNLRKGFLSFQKTD 617
           +S+GR    G  L   E +  V  FFNH  I+ +  +GF S  K+D
Sbjct: 432 FSIGRRQCPGEGLARMEIFLFVANFFNHYQISPS-SEGFPSIDKSD 476


>U41746-3|AAO25990.1|  429|Caenorhabditis elegans Aspartyl protease
           protein 2, isoformb protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 408 GRNIHRIDGSTYIIPYDSRTKQCIYSV 488
           G  ++ ID S  IIP    +  CIY++
Sbjct: 361 GNQVYNIDSSNTIIPLGDGSNNCIYAI 387


>U41746-2|AAO25989.1|  635|Caenorhabditis elegans Aspartyl protease
           protein 2, isoforma protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 408 GRNIHRIDGSTYIIPYDSRTKQCIYSV 488
           G  ++ ID S  IIP    +  CIY++
Sbjct: 567 GNQVYNIDSSNTIIPLGDGSNNCIYAI 593


>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
 Frame = +3

Query: 354 REVGLEDHMINNHGIPMKGRNIHRIDGSTYIIPYD-SRTKQCIYSVGRNYLNGLLLQESE 530
           +++G+ D  IN+H      R       ST  I ++  + ++  + +  + + G L ++  
Sbjct: 83  KKLGVWDQ-INSHRTKKVNRLFVFDSCSTSEIEFERGQQEEVAFIIENDLIVGSLYEKLA 141

Query: 531 KYENVERFFNHKLIASNLRKGF--LSFQKTDTKEIVEVNADLIIGADGAFSAVR-KEIMK 701
           +Y+NV+     K+   ++      ++  K +  +++E +  L+IGADG  S VR    + 
Sbjct: 142 EYKNVDVKTGAKVEDCSIPNALENMATIKLENGDVIETS--LLIGADGVNSKVRHASNLD 199

Query: 702 QPLFDYXQ 725
              F+Y Q
Sbjct: 200 YTTFNYNQ 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,087
Number of Sequences: 27780
Number of extensions: 335884
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)