Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20f08
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 38 0.001
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.033
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 32 0.076
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.10
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 30 0.23
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 30 0.23
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 30 0.31
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 29 0.54
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.71
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 1.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.6
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 27 2.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 2.9
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 3.8
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 3.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 3.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 3.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.0
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 5.0
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 5.0
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 403 DRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLERAEERAEQSDCKIVELEEELR 582
+++ A+ +A AE ++ K +EV +L L EQ+ E ++E ++ ++ ELEEE +
Sbjct: 6 EKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETK 65
Score = 31.5 bits (68), Expect = 0.10
Identities = 24/89 (26%), Positives = 47/89 (52%)
Frame = +1
Query: 313 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARK 492
A A+ EA A+ +E K +E + ++++ L + A+ EE +++ +++ +
Sbjct: 11 ARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQL--R 68
Query: 493 LVLMEQDLERAEERAEQSDCKIVELEEEL 579
L +D+++ E AEQ K+ LEEEL
Sbjct: 69 LKADNEDIQKTE--AEQLSRKVELLEEEL 95
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.033
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 532 VPPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTVEP 422
+PPPS AP + APP+ S P P + A+PV P
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 535 RVPPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTVEPPRWQRDHP--PCWCGSPAPCVF 362
+VPPP L AP + P + P A VT E P++ P P P P
Sbjct: 200 KVPPPPLSQAPVANTSSRPSSFAPPAGH--APNVTSESPKFPNRGPSIPSASVPPVPPSS 257
Query: 361 ARIHRRP 341
+ +RP
Sbjct: 258 YVLQQRP 264
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 529 PPPSLGPAP*EQACAPPL 476
PPP PAP A APPL
Sbjct: 6 PPPPPAPAPAAAAPAPPL 23
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.9 bits (69), Expect = 0.076
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 90 DKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPT 269
D H++R R++E+E NGK R G P + SGN A S P YPT
Sbjct: 3 DSHSSR---RKYEKEKLVFATNNGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYPT 56
Query: 270 AGGGP 284
P
Sbjct: 57 LSHEP 61
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.5 bits (68), Expect = 0.10
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1
Query: 325 LSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLM 504
+ + Q E+E RKA E + +E + A EA+ QAK AEE K+ E K
Sbjct: 533 IQQRIQEKAEAEAKRKA-EEKARLEAEENAKREAE-EQAKREAEEKAKREAEEKAKREAE 590
Query: 505 EQDLERAEERAEQ 543
E+ AEE A++
Sbjct: 591 EKAKREAEENAKR 603
Score = 30.7 bits (66), Expect = 0.18
Identities = 22/77 (28%), Positives = 42/77 (54%)
Frame = +1
Query: 313 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARK 492
A ++SE +A+ + I+ A++ R + + A +A+ +A+L AEE+ K+ E K
Sbjct: 513 APPQISE-EEASQRKDAIKLAIQQRIQEKAEAEAKRKAE-EKARLEAEENAKREAEEQAK 570
Query: 493 LVLMEQDLERAEERAEQ 543
E+ AEE+A++
Sbjct: 571 REAEEKAKREAEEKAKR 587
Score = 30.7 bits (66), Expect = 0.18
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 307 ATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 483
A AK +A E+E + ++ E + E + A EA+ +AK AEE K+ E
Sbjct: 597 AEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEE 655
Query: 484 ARKLVLMEQDLERAEERAEQSDCKIVELEEELRV 585
K E AEE+A++ + + E E +V
Sbjct: 656 KAKREAEENAKREAEEKAKREAEENAKREAEEKV 689
Score = 30.3 bits (65), Expect = 0.23
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 307 ATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEV 483
A A+L A E+E + ++ E + E + A EA+ +AK AEE+ K+ E
Sbjct: 549 AEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAE-EKAKREAEENAKREAEE 607
Query: 484 ARKLVLMEQDLERAEERAEQ 543
K E+ AEE+A++
Sbjct: 608 KAKREAEEKAKREAEEKAKR 627
Score = 29.9 bits (64), Expect = 0.31
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +1
Query: 328 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLME 507
+E + E+ ++ E + E + A EA+ +AK AEE K+ E K E
Sbjct: 613 AEEKAKREAEEKAKREAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEENAKREAEE 671
Query: 508 QDLERAEERAEQSDCKIVELEEE 576
+ AEE A++ + V+ E E
Sbjct: 672 KAKREAEENAKREAEEKVKRETE 694
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +1
Query: 328 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLME 507
+E + E+ ++ E + E + A EA+ +AK AEE+ K+ E K E
Sbjct: 637 AEEKAKREAEEKAKREAEEKAKREAEENAKREAE-EKAKREAEENAKREAEEKVKRETEE 695
Query: 508 QDLERAEERAEQSDCKIVELE 570
+AEE ++ K E++
Sbjct: 696 NAKRKAEEEGKREADKNPEIK 716
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 30.3 bits (65), Expect = 0.23
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 319 AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLV 498
++L E S+ D SE+ EN N +R+A LE+ LS +++ E+ +
Sbjct: 930 SRLFEISKQLDNSEQ-----EN--NKFRERIAELESHLSNYAEAKLAQERELEQTRVLIS 982
Query: 499 LMEQDLERAEERAEQSDCKIVELEEELRVVGN-NLKSLEVS 618
QD E +E E+ + ++ +EEE+R V + N + L V+
Sbjct: 983 DQSQDGE-LKELLEEKENALIMMEEEMRQVNDANTELLRVN 1022
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 30.3 bits (65), Expect = 0.23
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 334 ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEE-SDKKYE-EVARKLVLME 507
A+Q A E ER R A + + AI AQ Q ++ E+ + ++++ + +L +E
Sbjct: 362 AAQQAAEMERQRMAAQQHQQALE---AIQMAQAEQQRIAQEQLAQQQFQMQTQGQLAELE 418
Query: 508 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVS 618
Q L + EQS+ + + + +R + N L V+
Sbjct: 419 QQLLATRGQLEQSNVLLNQYDARVRTLENELSQAGVN 455
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 29.9 bits (64), Expect = 0.31
Identities = 27/98 (27%), Positives = 51/98 (52%)
Frame = +1
Query: 319 AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLV 498
A L++ Q ++ R K +++ N+ V L+ + S+ + ++ ++ +E+A+K +
Sbjct: 152 ATLADLEQFSNPITRPSKEVDSLENI----VTKLDLE-SEDLMRLKKQEQLDDEIAKKYL 206
Query: 499 LMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLE 612
L +Q+ AEE Q IV E+E N+KSLE
Sbjct: 207 LGQQE---AEEPLVQQQTSIVNPEKEEVTKTENIKSLE 241
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.1 bits (62), Expect = 0.54
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 406 RVAILEAQLSQAKLIA-EESDKKYEEVARKLVLMEQ--DLERAEERAEQSDCKIVELEEE 576
+V ILE++L L E ++KY E RKL L+E+ DL++ +A +S ++ EL
Sbjct: 870 KVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKA-RSIMQLDELNSR 928
Query: 577 LRVV 588
RV+
Sbjct: 929 KRVL 932
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.7 bits (61), Expect = 0.71
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 499 EQACAPPLRISCPTPRR*ASPVTVEPPRWQRDH 401
++A APP+ I CP R+ TV R+QRDH
Sbjct: 1341 QRASAPPIDIYCPGSRQ----FTVLQSRFQRDH 1369
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.2
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = +1
Query: 328 SEASQAADESERIRKALENRTNMEDDRVAILEA---QLSQAKLIAEESDKK--YEEVARK 492
S+A ERI+K +EN + + D + + + + L ES K+ EV
Sbjct: 855 SQAEIVGANKERIQKTVENGSQLLDSKSKAIHSNSRSMYDHCLALAESQKQGVNLEVQTL 914
Query: 493 LVLMEQDLERAEERAEQSDCKIVELEEELRVVGNN 597
L+++ E +E+ ++ ++++L E L VGNN
Sbjct: 915 DRLLQKVKEHSEDNTKEKHQQLLDLLESL--VGNN 947
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.5 bits (58), Expect = 1.6
Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Frame = +1
Query: 211 IMRREEA-ESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALENR 387
IM+ + A E + + L+R+I+ + +K+SE E A+ +
Sbjct: 298 IMKSKVALELQSSQLSRQIEFSKKDESSKLNILSELESKISEKENELSEILPKYNAIVSE 357
Query: 388 TNMEDDRVAILEAQ----LSQAKLIAEESDKKYEE--VARKLVLMEQDLERAEERAEQSD 549
+ + R+ +L+ Q L + ++ + KK + + +L+ + +++ +E ++
Sbjct: 358 ADDLNKRIMLLKNQKQSLLDKQSRTSQFTTKKERDEWIRNQLLQINRNINSTKENSDYLK 417
Query: 550 CKIVELEEELRVVGNNLKSLEVS 618
+ E+E EL+ + K +E+S
Sbjct: 418 TEYDEMENELKAKLSRKKEIEIS 440
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 319 AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLS--QAKLIAEESDKKYEEVARK 492
+ ++E Q +R LE +T +R+ +E + Q+KLIA D +
Sbjct: 885 SNITELKQDITLQRTVRNQLEIQTTELKERLKFMEERQENLQSKLIAANKDTTQNPDNVE 944
Query: 493 LVLMEQDLERAEERAEQSDCKIVELEEE 576
+ + +LER +E+ ++ + ++++
Sbjct: 945 VEAISIELERTKEKLRMAELEKSNIQQK 972
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 325 LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKLIAEESDKK 471
LSE AA R + LEN T +E ++ A L+ SQ K A+ES K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 202 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 89
A+V GTP RP F FP S K+ A +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 451 AEESDKKYEEVARKLVLMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKS 606
A+ +KK+ E R L+ E EQ IV +EE + V K+
Sbjct: 219 AKTWEKKFREALRDSKEYAAQLQTIHEEYEQQQAHIVRMEELIHAVEKERKT 270
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 358 ERIRKALENRTNMEDDRV--AILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLERAEE 531
E+ K +N T + +R A +E + S A + + ++ +E AR+L E L+ +E
Sbjct: 839 EQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEKQE 898
Query: 532 RAEQSDCKIVELEEEL 579
R Q + +++EE+
Sbjct: 899 RERQLQEERQKMQEEV 914
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 316 TAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQ--LSQAKLIAEESDKKYEEVAR 489
TA L E D E ++ L+N++ + AIL + L + K I ++ ++ + +
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTI-Q 319
Query: 490 KLVLMEQDLERAEERAEQS 546
K ++Q+ +EE A +S
Sbjct: 320 KENTVQQEASSSEEEAVKS 338
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +1
Query: 397 EDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLERAEERAEQSDCKIVELEEE 576
+D + L+ QL K +A E E V + + DL+ + A + D +
Sbjct: 841 KDALINNLQNQLESTKEVANELTITKERVLQ----LTNDLQEEQALAHEKDILVERANSR 896
Query: 577 LRVVGNNLKSLE 612
+ VV L SLE
Sbjct: 897 VEVVHERLSSLE 908
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 451 AEESDKKYEEVARKLVLMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVS 618
+ ++ KKY+ + +K + +DLE+ + S LE +LR + LE S
Sbjct: 1407 SSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSI----LEAQLREITKQKNMLEQS 1458
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 5.0
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +1
Query: 370 KALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLERAEE---RAE 540
K+ E+ + + D V I + S ++L EES++ E K + +++ R
Sbjct: 198 KSTEHDSTL-DSGVVIDGREKSSSELHEEESEQAAEGDTAKNSGTDAQAPLSDDEWLRLH 256
Query: 541 QSDCKIVELEEELRVVGNNLKSLE 612
++ K + EEE+ VVG+ LKS +
Sbjct: 257 RTRIKEKQPEEEVSVVGDELKSFD 280
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +1
Query: 361 RIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLERAEERAE 540
R+R+ E +T+ EDD + ++S + + + ++ L +E D+E E +
Sbjct: 130 RVREEQEEKTDNEDDN----DVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFD 185
Query: 541 QSDCKIVE 564
D ++++
Sbjct: 186 DQDLQMLQ 193
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 474 RRGGAQACSYGAGPREGGGTRRTKR 548
+RGG GPR G G+R+ KR
Sbjct: 229 QRGGTLEAPRKGGPRSGVGSRKRKR 253
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 361 ARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQLL 224
AR H RP R + R + + A G PP+ + SG R + L
Sbjct: 82 ARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRARNL 127
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 463 DKKYEEVARKLVLMEQDLERAEERAEQSDCK 555
D+K +V++ L + D+E A+E E++D +
Sbjct: 4093 DEKEGDVSKDSDLEDMDMEAADENKEEADAE 4123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.128 0.327
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,517
Number of Sequences: 5004
Number of extensions: 39511
Number of successful extensions: 182
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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