Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f07
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   192   6e-50
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    46   5e-06
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    35   0.013
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    33   0.040
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.38 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    29   0.66 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   6.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.1  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  192 bits (467), Expect = 6e-50
 Identities = 95/195 (48%), Positives = 126/195 (64%), Gaps = 5/195 (2%)
 Frame = +3

Query: 141 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 320
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNLN A+EKLA     
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74

Query: 321 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNL 485
            D++  + L  A+KFNGGGHINHS+FW  L+P    GGKP  S  L KA+   +GS ++ 
Sbjct: 75  -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 486 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYL 665
           + +++ A  ++QGSGW WL  +K    L+I T  NQD +  +    P+ GID WEHAYY 
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189

Query: 666 QYKNVRADYVKAIFD 710
           QY+N +A+Y KAI++
Sbjct: 190 QYENRKAEYFKAIWN 204


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
 Frame = +3

Query: 381 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL 542
           +NH  F+  L SP      +D+    L   ++  FGS+  LK+Q+     +V G GW WL
Sbjct: 76  VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135

Query: 543 GYNKQMKKLQIATCQNQD---------PLQATTGLVPLFGIDVWEHAYYLQY 671
            Y+ +     +    N           P   T  +VPL  +++W++AY   Y
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAYLDDY 187


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 36/216 (16%)
 Frame = +3

Query: 171 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 344
           HT+P L  + N L P+ S E + +   +H    +  LN  V   +L  +     I     
Sbjct: 39  HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96

Query: 345 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 491
           L   A   +F    + NH  F   +             + +  + KAV ++FGS +NL +
Sbjct: 97  LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156

Query: 492 QLSTASVAVQGSGWGWL---GYNK--QMKKLQIAT------CQNQDPLQATT-------- 614
           ++   +    G+ W W+    YN+   ++  Q  +       Q+ DP   ++        
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQSNDPHLISSVPDYSARP 216

Query: 615 ---GLVPLFGIDVWEHAYYLQYKNV-RADYVKAIFD 710
                VP+  + +W HAYY  Y  + R+ Y+   FD
Sbjct: 217 RKYAHVPILNLCLWNHAYYKDYGLLNRSRYIDTWFD 252


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 32/110 (29%), Positives = 47/110 (42%)
 Frame = +3

Query: 162 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 341
           RQKHT P  P   +A          S HH  HH+   N L    EK      K + ++  
Sbjct: 97  RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142

Query: 342 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKN 491
           + +P+  F  G  IN+ I   N S +   P +  +  + K   S+ +LKN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 252 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 425
           K+HA           K+ QA  K   D  +N+A  + ++N     N+ +FW  +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 695 HVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 591
           H    +V ++K +  +P +D+EER +   GLQ I+
Sbjct: 409 HTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 585  QNQDPLQATTGLVPLFGIDVW 647
            ++ DPL+AT+  +PLF +  W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 604 RPPLDWSRSSESMYGSTR 657
           +PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 350 CKVDNGVDITFSLCLCEFLFSNV 282
           C VD+  +I+ SLC  EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 272  DISRVMFAVMKTHDFTANDRLQCIVLVRK 186
            D   V+F+  KT    ANDRLQCI+  ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,242
Number of Sequences: 5004
Number of extensions: 63711
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)