Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20f06
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    36   0.015
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412...    31   0.55 
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    31   0.55 
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    29   1.7  
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   3.0  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    28   3.9  

>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 376 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 513
           N E    + A+E  G+G+F  ++LA  G+    E M+++ +SF+ P
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGP 240


>09_06_0267 +
           21938300-21938371,21938963-21939235,21940665-21941202,
           21941288-21941490,21941603-21941827
          Length = 436

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 397 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFI 507
           + A+   G+G+F   +LA  G+   SE M+++ +SF+
Sbjct: 35  DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFV 71


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 355 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 513
           ++ E+    E    + A+   G+GRF  ++LA   +   +E M+V+ +SF+ P
Sbjct: 6   AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGP 58


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 403 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 513
           A+  +G+GR+  ++L+  G+   +E M+++ +SF+ P
Sbjct: 15  ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGP 51


>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  LTNNKEEAHQIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 215
           LT+NKE +  IVT +  AVGS    P  + L  P + +  R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 380 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 294
           E+ P SGS F+FLTE T  S     PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,309
Number of Sequences: 37544
Number of extensions: 396369
Number of successful extensions: 1167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)