Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e24
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0601 - 4907397-4907685,4908592-4909100                           30   1.8  
03_02_0545 + 9373344-9374963                                           29   3.2  
01_04_0056 + 15476868-15476896,15477581-15478259                       29   3.2  
12_01_0747 - 6724513-6724801,6725708-6726174                           29   4.2  
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974...    29   4.2  
08_02_0254 - 14879724-14880635                                         28   7.4  
07_01_0312 + 2214050-2214556                                           27   9.7  
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230...    27   9.7  

>12_01_0601 - 4907397-4907685,4908592-4909100
          Length = 265

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 21  VGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPVAD--GIAGFLGD 173
           +G   +R    DV SE+  S+ VKSS  +   VI GY +   D  G+   L D
Sbjct: 192 IGIEEMRGKAKDVSSEEGNSEEVKSSDDDEDMVIGGYTQDPYDDSGLEDLLQD 244


>03_02_0545 + 9373344-9374963
          Length = 539

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 398 GPARLGHPGLSFSAPPGYLRPTTRDSHHYVHRSFPRNL 511
           G +RLG P   FSA  G++R       HY   S P+ L
Sbjct: 218 GHSRLGEPQFPFSAEKGFVRSHRMQRKHYRGLSNPQCL 255


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 172 SPRNPAMPSATGLTYPSITFPPSPT 98
           +PR+PA P+AT  T P    PP PT
Sbjct: 74  NPRHPATPTATAAT-PKPNTPPDPT 97


>12_01_0747 - 6724513-6724801,6725708-6726174
          Length = 251

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 21  VGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVK-PVAD-GIAGFLGD 173
           +G   +R    DV SE+  S+ VKSS  +   VI GY + P  D G+   L D
Sbjct: 178 IGIEEMRGKAKDVSSEEGNSEEVKSSDYDEDMVIRGYAQNPYDDSGLEDLLQD 230


>08_02_0260 +
           14990324-14990916,14991055-14991245,14997427-14997495,
           14998134-14999221
          Length = 646

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 508 VAWKRAMDVMVTVACGRSKVSRWCRER 428
           ++W++  D++V VA G   +  WC  R
Sbjct: 444 ISWEKLYDILVGVAQGLDYLHHWCNHR 470


>08_02_0254 - 14879724-14880635
          Length = 303

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 508 VAWKRAMDVMVTVACGRSKVSRWCRER 428
           ++W++  +++V +A G   + RWC  R
Sbjct: 100 LSWEKLYEILVGIAQGLDYLHRWCNHR 126


>07_01_0312 + 2214050-2214556
          Length = 168

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 208 PLTCTSKVTLK*SPRNPAMPSATGLTYPSITFP 110
           P+    KVTL   P  PA+P  T    PS+  P
Sbjct: 128 PMPAVPKVTLPPMPSMPAVPKVTLPPMPSVPMP 160


>04_04_0378 -
           24822436-24822521,24822623-24822738,24823010-24823092,
           24823772-24823918,24824004-24824051,24824153-24824353,
           24824981-24825152,24825235-24825299,24825813-24825939,
           24826436-24826528,24826608-24826696,24826804-24826950,
           24827047-24827359,24827474-24828048
          Length = 753

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 341 RRRSESMERQSIPILRQHAGPARLGHPGLSFSAPPGYLRPTTRDSHH 481
           RRR  ++E  +IP+L +H+  +  G                +R+S+H
Sbjct: 8   RRRKYALEHTNIPVLLRHSSISTFGQEKFGCEIEQSTASQNSRESNH 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,650,049
Number of Sequences: 37544
Number of extensions: 326657
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)